Construct: ORF ccsbBroadEn_03214
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011238.1_s300c1, BRDN0000392408
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RMDN1 (51115)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51115 | RMDN1 | regulator of microtubule dy... | NM_016033.3 | 100% | 100% | |
| 2 | human | 51115 | RMDN1 | regulator of microtubule dy... | XM_017013520.1 | 95.8% | 94.9% | (many diffs) |
| 3 | human | 51115 | RMDN1 | regulator of microtubule dy... | XM_017013521.1 | 95.8% | 95.8% | 758_759ins39 |
| 4 | human | 51115 | RMDN1 | regulator of microtubule dy... | XM_011517093.2 | 95.7% | 95.7% | 130_171del |
| 5 | human | 51115 | RMDN1 | regulator of microtubule dy... | XM_011517094.2 | 91.8% | 90.8% | (many diffs) |
| 6 | human | 51115 | RMDN1 | regulator of microtubule dy... | XM_011517096.2 | 91.7% | 91.7% | 130_171del;800_801ins39 |
| 7 | human | 51115 | RMDN1 | regulator of microtubule dy... | XM_011517095.2 | 91.5% | 90.8% | (many diffs) |
| 8 | human | 51115 | RMDN1 | regulator of microtubule dy... | NM_001286719.1 | 90.4% | 90.4% | 493_494ins90 |
| 9 | human | 51115 | RMDN1 | regulator of microtubule dy... | XM_017013519.1 | 87.8% | 86.8% | (many diffs) |
| 10 | human | 51115 | RMDN1 | regulator of microtubule dy... | XM_011517097.2 | 86.5% | 86.5% | 130_171del;535_536ins90 |
| 11 | human | 51115 | RMDN1 | regulator of microtubule dy... | NM_001286707.1 | 86.3% | 86.3% | 493_494ins90;668_669ins39 |
| 12 | human | 51115 | RMDN1 | regulator of microtubule dy... | XM_017013524.1 | 85.9% | 85.9% | 0_1ins132 |
| 13 | human | 51115 | RMDN1 | regulator of microtubule dy... | XM_017013523.1 | 84.7% | 81% | (many diffs) |
| 14 | human | 51115 | RMDN1 | regulator of microtubule dy... | XM_011517098.2 | 82.6% | 82.6% | 130_171del;535_536ins90;710_711ins39 |
| 15 | human | 51115 | RMDN1 | regulator of microtubule dy... | XM_017013518.2 | 82% | 77.6% | (many diffs) |
| 16 | human | 51115 | RMDN1 | regulator of microtubule dy... | XM_017013526.1 | 81.8% | 81.8% | 0_1ins132;626_627ins39 |
| 17 | human | 51115 | RMDN1 | regulator of microtubule dy... | XM_017013522.1 | 81.1% | 77.5% | (many diffs) |
| 18 | human | 51115 | RMDN1 | regulator of microtubule dy... | XM_005250944.3 | 79.7% | 75.5% | (many diffs) |
| 19 | human | 51115 | RMDN1 | regulator of microtubule dy... | XM_011517090.3 | 79.1% | 74.9% | (many diffs) |
| 20 | human | 51115 | RMDN1 | regulator of microtubule dy... | NM_001317807.2 | 77.8% | 76.7% | (many diffs) |
| 21 | human | 51115 | RMDN1 | regulator of microtubule dy... | XM_017013527.2 | 76.4% | 76.4% | 0_1ins132;361_362ins90 |
| 22 | human | 51115 | RMDN1 | regulator of microtubule dy... | XM_017013528.1 | 76.4% | 76.4% | 0_1ins132;361_362ins90 |
| 23 | human | 51115 | RMDN1 | regulator of microtubule dy... | XM_011517091.2 | 73.6% | 69.7% | (many diffs) |
| 24 | human | 51115 | RMDN1 | regulator of microtubule dy... | XM_005250947.3 | 71.9% | 67.9% | (many diffs) |
| 25 | human | 51115 | RMDN1 | regulator of microtubule dy... | XM_011517092.2 | 69.4% | 65.6% | (many diffs) |
| 26 | human | 51115 | RMDN1 | regulator of microtubule dy... | XM_005250948.3 | 68.3% | 64.3% | (many diffs) |
| 27 | human | 51115 | RMDN1 | regulator of microtubule dy... | XM_006716573.4 | 68.3% | 64.3% | (many diffs) |
| 28 | human | 51115 | RMDN1 | regulator of microtubule dy... | XR_928336.3 | 21.7% | (many diffs) | |
| 29 | mouse | 66302 | Rmdn1 | regulator of microtubule dy... | NM_025476.6 | 84.4% | 81.5% | (many diffs) |
| 30 | mouse | 66302 | Rmdn1 | regulator of microtubule dy... | XR_001784180.1 | 24% | (many diffs) | |
| 31 | mouse | 66302 | Rmdn1 | regulator of microtubule dy... | XR_881071.2 | 20.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1008
- ORF length:
- 942
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GCTGGCTGCT CGACTGTGGC GCCTTCTGCC TTTCCGACGT GGAGCCGCCC 121 CGGGGTCTCG TCTCCCTGCG GGGACTTCGG GCAGCCGCGG GCATTGCGGC CCCTGTCGAT 181 TCCGCGGCTT CGAGGTAATG GGAAACCCAG GAACTTTCAA AAGAGGCCTT TTACTCTCAG 241 CTTTGTCGTA TTTGGGTTTT GAAACTTACC AGGTTATCTC TCAGGCTGCT GTGGTTCATG 301 CCACAGCCAA AGTTGAAGAA ATACTTGAAC AAGCAGACTA CCTGTATGAA AGCGGAGAAA 361 CAGAAAAACT TTATCAGTTG CTAACCCAAT ACAAGGAAAG TGAAGATGCA GAGTTACTGT 421 GGCGTTTGGC ACGGGCATCA CGTGATGTAG CTCAGCTTAG CAGAACCTCA GAAGAGGAGA 481 AAAAGCTATT GGTGTATGAA GCCCTAGAGT ATGCAAAAAG AGCACTAGAA AAAAATGAAT 541 CAAGTTTTGC ATCTCATAAG TGGTATGCAA TCTGCCTTAG TGATGTTGGA GATTATGAAG 601 GCATCAAGGC TAAAATTGCA AATGCATATA TCATCAAGGA GCATTTTGAG AAAGCAATTG 661 AACTGAACCC TAAAGATGCT ACTTCAATTC ACCTTATGGG TATTTGGTGC TATACATTTG 721 CCGAAATGCC TTGGTATCAA AGAAGAATTG CTAAAATGCT GTTTGCAACT CCTCCTAGTT 781 CCACCTATGA GAAGGCCTTA GGCTACTTTC ACAGGGCAGA ACAAGTGGAT CCAAACTTCT 841 ACAGCAAAAA CTTACTTCTT TTAGGAAAGA CATACTTGAA ACTACACAAC AAAAAGCTTG 901 CTGCTTTCTG GCTAATGAAA GCCAAGGACT ATCCAGCACA CACAGAGGAG GATAAACAGA 961 TACAGACAGA AGCTGCTCAG TTGCTTACAA GTTTCAGTGA GAAGAATTGC CCAACTTTCT 1021 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac