Transcript: Mouse XR_001784180.1

PREDICTED: Mus musculus regulator of microtubule dynamics 1 (Rmdn1), transcript variant X2, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Rmdn1 (66302)
Length:
3339
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001784180.1
NBCI Gene record:
Rmdn1 (66302)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001784180.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000191985 GCAACAACATACCTAATACTT pLKO.1 3210 3UTR 100% 5.625 4.500 N Rmdn1 n/a
2 TRCN0000319812 GCAACAACATACCTAATACTT pLKO_005 3210 3UTR 100% 5.625 4.500 N Rmdn1 n/a
3 TRCN0000201727 GCGAGGTGATAGGAAATACAA pLKO.1 2212 3UTR 100% 5.625 4.500 N Rmdn1 n/a
4 TRCN0000319876 GCGAGGTGATAGGAAATACAA pLKO_005 2212 3UTR 100% 5.625 4.500 N Rmdn1 n/a
5 TRCN0000146666 CTTCAATTCACCTTATGGGTA pLKO.1 2704 3UTR 100% 2.640 2.112 N RMDN1 n/a
6 TRCN0000312471 CTTCAATTCACCTTATGGGTA pLKO_005 2704 3UTR 100% 2.640 2.112 N RMDN1 n/a
7 TRCN0000192505 GCAATCTGCATTAGTGATGTT pLKO.1 2589 3UTR 100% 4.950 3.465 N Rmdn1 n/a
8 TRCN0000319877 GCAATCTGCATTAGTGATGTT pLKO_005 2589 3UTR 100% 4.950 3.465 N Rmdn1 n/a
9 TRCN0000189931 GCCACAGCCAAAGTTGAAGAA pLKO.1 2322 3UTR 100% 4.950 3.465 N Rmdn1 n/a
10 TRCN0000319811 GCCACAGCCAAAGTTGAAGAA pLKO_005 2322 3UTR 100% 4.950 3.465 N Rmdn1 n/a
11 TRCN0000148382 CCTTATGGGTATTTGGTGCTA pLKO.1 2714 3UTR 100% 2.640 1.848 N RMDN1 n/a
12 TRCN0000312419 CCTTATGGGTATTTGGTGCTA pLKO_005 2714 3UTR 100% 2.640 1.848 N RMDN1 n/a
13 TRCN0000148167 GATGCTACTTCAATTCACCTT pLKO.1 2697 3UTR 100% 2.640 1.848 N RMDN1 n/a
14 TRCN0000148289 CCCTAAAGATGCTACTTCAAT pLKO.1 2690 3UTR 100% 5.625 3.375 N RMDN1 n/a
15 TRCN0000312417 CCCTAAAGATGCTACTTCAAT pLKO_005 2690 3UTR 100% 5.625 3.375 N RMDN1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001784180.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03214 pDONR223 100% 24% None (many diffs) n/a
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