Construct: ORF ccsbBroadEn_03218
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002203.1_s300c1, BRDN0000388776
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RPL26L1 (51121)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51121 | RPL26L1 | ribosomal protein L26 like 1 | NM_001317980.1 | 100% | 100% | |
| 2 | human | 51121 | RPL26L1 | ribosomal protein L26 like 1 | NM_001317981.1 | 100% | 100% | |
| 3 | human | 51121 | RPL26L1 | ribosomal protein L26 like 1 | NM_001317982.1 | 100% | 100% | |
| 4 | human | 51121 | RPL26L1 | ribosomal protein L26 like 1 | NM_016093.3 | 100% | 100% | |
| 5 | human | 51121 | RPL26L1 | ribosomal protein L26 like 1 | XM_011534565.2 | 100% | 100% | |
| 6 | human | 51121 | RPL26L1 | ribosomal protein L26 like 1 | XM_017009519.2 | 100% | 100% | |
| 7 | human | 51121 | RPL26L1 | ribosomal protein L26 like 1 | XM_017009520.1 | 100% | 100% | |
| 8 | human | 6154 | RPL26 | ribosomal protein L26 | NM_000987.5 | 84.1% | 98.6% | (many diffs) |
| 9 | human | 6154 | RPL26 | ribosomal protein L26 | NM_001315530.2 | 84.1% | 98.6% | (many diffs) |
| 10 | human | 6154 | RPL26 | ribosomal protein L26 | NM_001315531.2 | 84.1% | 98.6% | (many diffs) |
| 11 | mouse | 19941 | Rpl26 | ribosomal protein L26 | NM_009080.2 | 83.6% | 98.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 501
- ORF length:
- 435
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA GTTCAATCCC TTCGTTACCT CGGACCGCAG TAAAAACCGC AAACGTCACT 121 TCAATGCCCC CTCACACGTG CGCAGGAAGA TCATGTCATC CCCGCTCTCC AAGGAGCTGC 181 GGCAGAAGTA CAATGTCCGC TCCATGCCCA TCCGCAAGGA CGACGAGGTC CAGGTAGTTC 241 GAGGACACTA CAAAGGTCAG CAAATTGGCA AGGTAGTCCA GGTGTACAGA AAGAAATATG 301 TCATCTACAT CGAGCGGGTG CAGCGTGAGA AGGCCAACGG CACAACTGTC CACGTGGGCA 361 TTCACCCAAG CAAGGTGGTT ATCACCAGGC TAAAACTGGA CAAGGATCGG AAAAAAATTC 421 TTGAACGCAA AGCCAAGTCT CGACAAGTTG GAAAAGAGAA AGGCAAATAT AAAGAAGAAC 481 TTATTGAGAA AATGCAGGAA TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 541 attgcttatc aatttgttgc aacgaac