Transcript: Human NM_001317982.1

Homo sapiens ribosomal protein L26 like 1 (RPL26L1), transcript variant 4, mRNA.

Source:
NCBI, updated 2018-07-01
Taxon:
Homo sapiens (human)
Gene:
RPL26L1 (51121)
Length:
745
CDS:
65..502

Additional Resources:

NCBI RefSeq record:
NM_001317982.1
NBCI Gene record:
RPL26L1 (51121)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001317982.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000240139 CCACGGTTTAACCGGAGATTT pLKO_005 521 3UTR 100% 13.200 18.480 N RPL26P30 n/a
2 TRCN0000117413 GAAGTACAATGTCCGCTCCAT pLKO.1 184 CDS 100% 2.640 3.696 N RPL26L1 n/a
3 TRCN0000369460 ATATGTCATCTACATCGAGCG pLKO_005 295 CDS 100% 1.200 1.680 N RPL26L1 n/a
4 TRCN0000343084 GCTGCGGCAGAAGTACAATGT pLKO_005 175 CDS 100% 4.950 3.960 N RPL26L1 n/a
5 TRCN0000343082 ACCGCAAACGTCACTTCAATG pLKO_005 105 CDS 100% 10.800 7.560 N RPL26L1 n/a
6 TRCN0000240140 AGCTGCGGCAGAAGTACAATG pLKO_005 174 CDS 100% 10.800 7.560 N RPL26P30 n/a
7 TRCN0000117415 CAAAGCCAAGTCTCGACAAGT pLKO.1 427 CDS 100% 4.950 3.465 N RPL26L1 n/a
8 TRCN0000117414 CCAGGTAGTTCGAGGACACTA pLKO.1 229 CDS 100% 4.950 3.465 N RPL26L1 n/a
9 TRCN0000369523 GGTAGTCCAGGTGTACAGAAA pLKO_005 271 CDS 100% 4.950 3.465 N RPL26L1 n/a
10 TRCN0000352744 TGCGCAGGAAGATCATGTCAT pLKO_005 138 CDS 100% 4.950 3.465 N RPL26L1 n/a
11 TRCN0000343083 CGCAAAGCCAAGTCTCGACAA pLKO_005 425 CDS 100% 4.050 2.835 N RPL26L1 n/a
12 TRCN0000369461 GAGAAGGCCAACGGCACAACT pLKO_005 326 CDS 100% 1.650 1.155 N RPL26L1 n/a
13 TRCN0000240141 CACTACAAAGGTCAGCAAATT pLKO_005 245 CDS 100% 13.200 7.920 N RPL26P30 n/a
14 TRCN0000117416 ACACTACAAAGGTCAGCAAAT pLKO.1 244 CDS 100% 10.800 6.480 N RPL26L1 n/a
15 TRCN0000240142 TCACCCAAGCAAGGTGGTTAT pLKO_005 361 CDS 100% 10.800 6.480 N RPL26P30 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001317982.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03218 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_03218 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000471468 TGCCTACAGACGGAAAGGTACGAT pLX_317 100% 100% 100% V5 n/a
4 ccsbBroadEn_01428 pDONR223 100% 84.1% 98.6% None (many diffs) n/a
5 ccsbBroad304_01428 pLX_304 0% 84.1% 98.6% V5 (many diffs) n/a
6 TRCN0000491407 ATACTTCTGGCTACTGGTCGTCCA pLX_317 77.7% 84.1% 98.6% V5 (many diffs) n/a
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