Construct: ORF ccsbBroadEn_03223

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009719.1_s300c1, BRDN0000396781
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ASB3 (51130)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51130 ASB3 ankyrin repeat and SOCS box... NM_016115.5 100% 100%
2 human 100302652 GPR75-ASB3 GPR75-ASB3 readthrough NM_001164165.1 93.1% 93.1% 1_114del
3 human 51130 ASB3 ankyrin repeat and SOCS box... NM_001201965.2 85.9% 85.9% 0_1ins219
4 human 51130 ASB3 ankyrin repeat and SOCS box... NM_145863.3 85.9% 85.9% 0_1ins219
5 mouse 65257 Asb3 ankyrin repeat and SOCS box... NM_023906.3 85.1% 82.6% (many diffs)
6 mouse 65257 Asb3 ankyrin repeat and SOCS box... XM_006514771.3 85.1% 82.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1620
ORF length:
1554
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA TTTTACAGAG GCTTACGCGG ACACGTGCTC TACAGTTGGA CTTGCTGCCA
121GGGAAGGCAA TGTTAAAGTC TTAAGGAAAC TGCTCAAAAA GGGCCGAAGT GTCGATGTTG
181CTGATAACAG GGGATGGATG CCAATTCATG AAGCAGCTTA TCACAACTCT GTAGAATGTT
241TGCAAATGTT AATTAATGCA GATTCATCTG AAAACTACAT TAAGATGAAG ACCTTTGAAG
301GTTTCTGTGC TTTGCATCTC GCTGCAAGTC AAGGACATTG GAAAATCGTA CAGATTCTTT
361TAGAAGCTGG GGCAGATCCT AATGCAACTA CTTTAGAAGA AACGACACCA TTGTTTTTAG
421CTGTTGAAAA TGGACAGATA GATGTGTTAA GGCTGTTGCT TCAACACGGA GCAAATGTTA
481ATGGATCCCA TTCTATGTGT GGATGGAACT CCTTGCACCA GGCTTCTTTT CAGGAAAATG
541CTGAGATCAT AAAATTGCTT CTTAGAAAAG GAGCAAACAA GGAATGCCAG GATGACTTTG
601GAATCACACC TTTATTTGTG GCTGCTCAGT ATGGCAAGCT AGAAAGCTTG AGCATACTTA
661TTTCATCGGG TGCAAATGTC AATTGTCAAG CCTTGGACAA AGCTACACCC TTGTTCATTG
721CTGCTCAAGA GGGACACACA AAATGTGTGG AGCTTTTGCT CTCCAGTGGG GCAGATCCTG
781ATCTTTACTG TAATGAGGAC AGTTGGCAGT TACCTATTCA TGCAGCTGCA CAAATGGGCC
841ATACAAAAAT CTTGGACTTG TTAATACCAC TTACTAACCG GGCCTGTGAC ACTGGGCTAA
901ACAAAGTAAG CCCTGTTTAC TCAGCAGTGT TTGGGGGACA TGAAGATTGC CTAGAAATAT
961TACTCCGGAA TGGCTACAGC CCAGACGCCC AGGCGTGCCT TGTTTTTGGA TTCAGTTCTC
1021CTGTGTGCAT GGCTTTCCAA AAGGACTGTG AGTTCTTTGG AATTGTGAAC ATTCTTTTGA
1081AATATGGAGC CCAGATAAAT GAACTTCATT TGGCATACTG CCTGAAGTAC GAGAAGTTTT
1141CGATATTTCG CTACTTTTTG AGGAAAGGTT GCTCATTGGG ACCATGGAAC CATATATATG
1201AATTTGTAAA TCATGCAATT AAAGCACAAG CAAAATATAA GGAGTGGTTG CCACATCTTC
1261TGGTTGCTGG ATTTGACCCA CTGATTCTAC TGTGCAATTC TTGGATTGAC TCAGTCAGCA
1321TTGACACCCT TATCTTCACT TTGGAGTTTA CTAATTGGAA GACACTTGCA CCAGCTGTTG
1381AAAGGATGCT CTCTGCTCGT GCCTCAAACG CTTGGATTCT ACAGCAACAT ATTGCCACTG
1441TTCCATCCCT GACCCATCTT TGTCGTTTGG AAATTCGGTC CAGTCTAAAA TCAGAACGTC
1501TACGGTCTGA CAGTTATATT AGTCAGCTGC CACTTCCCAG AAGCCTACAT AATTATTTGC
1561TCTATGAAGA CGTTCTGAGG ATGTATGAAG TTCCAGAACT GGCAGCTATT CAAGATGGAT
1621ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
1681acgaac

Download FASTA (ORF) (Full)