Construct: ORF ccsbBroadEn_03323

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002711.1_s300c1, BRDN0000457345
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LARS1 (51520)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51520 LARS1 leucyl-tRNA synthetase 1 NM_020117.11 100% 100%
2 human 51520 LARS1 leucyl-tRNA synthetase 1 NM_016460.3 97.7% 97.7% 211_212ins81
3 human 51520 LARS1 leucyl-tRNA synthetase 1 NM_001317964.1 96% 96% 291_292ins138
4 human 51520 LARS1 leucyl-tRNA synthetase 1 NM_001317965.1 95.4% 95.4% 0_1ins162
5 human 51520 LARS1 leucyl-tRNA synthetase 1 XM_011537656.3 95.4% 95.4% 0_1ins162
6 mouse 107045 Lars leucyl-tRNA synthetase NM_134137.2 85.8% 90% (many diffs)
7 mouse 107045 Lars leucyl-tRNA synthetase XR_001782319.1 74.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3597
ORF length:
3528
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCGGAAAGA AAAGGAACAG CCAAAGTGGA CTTTTTGAAG AAGATTGAGA
121AAGAAATCCA ACAGAAATGG GATACTGAGA GAGTGTTTGA GGTCAATGCA TCTAATTTAG
181AGAAACAGAC CAGCAAGGGC AAGTATTTTG TAACCTTCCC ATATCCATAT ATGAATGGAC
241GCCTTCATTT GGGACACACG TTTTCTTTAT CCAAATGTGA GTTTGCTGTA GGGTACCAGC
301GATTGAAAGG AAAATGTTGT CTGTTTCCCT TTGGCCTGCA CTGTACTGGA ATGCCTATTA
361AGGCATGTGC TGATAAGTTG AAAAGAGAAA TAGAGCTGTA TGGTTGCCCC CCTGATTTTC
421CAGATGAAGA AGAGGAAGAG GAAGAAACCA GTGTTAAAAC AGAAGATATA ATAATTAAGG
481ATAAAGCTAA AGGAAAAAAG AGTAAAGCTG CTGCTAAAGC TGGATCTTCT AAATACCAGT
541GGGGCATTAT GAAATCCCTT GGCCTGTCTG ATGAAGAGAT AGTAAAATTT TCTGAAGCAG
601AACATTGGCT TGATTATTTC CCGCCACTGG CTATTCAGGA TTTAAAAAGA ATGGGTTTGA
661AGGTAGACTG GCGTCGTTCC TTCATCACCA CTGATGTTAA TCCTTACTAT GATTCATTTG
721TCAGATGGCA ATTTTTAACA TTAAGAGAAA GAAACAAAAT TAAATTTGGG AAGCGGTATA
781CAATTTACTC TCCGAAAGAT GGACAGCCTT GCATGGATCA TGATAGACAA ACTGGAGAGG
841GTGTTGGACC TCAGGAATAT ACTTTACTCA AATTGAAGGT GCTTGAGCCA TACCCATCTA
901AATTAAGTGG CCTGAAAGGT AAAAATATTT TCTTGGTGGC TGCTACTCTC AGACCTGAGA
961CCATGTTTGG GCAGACAAAT TGTTGGGTTC GTCCTGATAT GAAGTACATT GGATTTGAGA
1021CGGTGAATGG TGATATATTC ATCTGTACCC AAAAAGCAGC CAGGAATATG TCATACCAGG
1081GCTTTACCAA AGACAATGGC GTGGTGCCTG TTGTTAAGGA ATTAATGGGG GAGGAAATTC
1141TTGGTGCATC ACTTTCTGCA CCTTTAACAT CATACAAGGT GATCTATGTT CTCCCAATGC
1201TAACTATTAA GGAGGATAAA GGCACTGGTG TGGTTACAAG TGTTCCTTCC GACTCCCCTG
1261ATGATATTGC TGCCCTCAGA GACTTGAAGA AAAAGCAAGC CTTACGAGCA AAATATGGAA
1321TTAGAGATGA CATGGTCTTG CCATTTGAGC CGGTGCCAGT CATTGAAATC CCAGGTTTTG
1381GAAATCTTTC TGCTGTAACC ATTTGTGATG AGTTGAAAAT TCAGAGCCAG AATGACCGGG
1441AAAAACTTGC AGAAGCAAAG GAGAAGATAT ATCTAAAAGG ATTTTATGAG GGTATCATGT
1501TGGTGGATGG ATTTAAAGGA CAGAAGGTTC AAGATGTAAA GAAGACTATT CAGAAAAAGA
1561TGATTGACGC TGGAGATGCA CTTATTTACA TGGAACCAGA GAAACAAGTG ATGTCCAGGT
1621CGTCAGATGA ATGTGTTGTG GCTCTGTGTG ACCAGTGGTA CTTGGATTAT GGAGAAGAGA
1681ATTGGAAGAA ACAGACATCT CAGTGCTTGA AGAACCTGGA AACATTCTGT GAGGAGACCA
1741GGAGGAATTT TGAAGCCACC TTAGGTTGGC TACAAGAACA TGCTTGCTCA AGAACTTATG
1801GTCTAGGCAC TCACCTGCCT TGGGATGAGC AGTGGCTGAT TGAATCACTT TCTGACTCCA
1861CTATTTACAT GGCATTTTAC ACAGTTGCAC ACCTATTGCA GGGGGGTAAC TTGCATGGAC
1921AGGCAGAGTC TCCGCTGGGC ATTAGACCGC AACAGATGAC CAAGGAAGTT TGGGATTATG
1981TTTTCTTCAA GGAGGCTCCA TTTCCTAAGA CTCAGATTGC AAAGGAAAAA TTAGATCAGT
2041TAAAGCAGGA GTTTGAATTC TGGTATCCTG TTGATCTTCG CGTCTCTGGC AAGGATCTTG
2101TTCCAAATCA TCTTTCATAT TACCTTTATA ATCATGTGGC TATGTGGCCG GAACAAAGTG
2161ACAAATGGCC TACAGCTGTG AGAGCAAATG GACATCTCCT CCTGAACTCT GAGAAGATGT
2221CAAAATCCAC AGGCAACTTC CTCACTTTGA CCCAAGCTAT TGACAAATTT TCAGCAGATG
2281GAATGCGTTT GGCTCTGGCT GATGCTGGTG ACACTGTAGA AGATGCCAAC TTTGTGGAAG
2341CCATGGCAGA TGCAGGTATT CTCCGTCTGT ACACCTGGGT AGAGTGGGTG AAAGAAATGG
2401TTGCCAACTG GGACAGCCTA AGAAGTGGTC CTGCCAGCAC TTTCAATGAT AGAGTTTTTG
2461CCAGTGAATT GAATGCAGGA ATTATAAAAA CAGATCAAAA CTATGAAAAG ATGATGTTTA
2521AAGAAGCTTT GAAAACAGGG TTTTTTGAGT TTCAGGCCGC AAAAGATAAG TACCGTGAAT
2581TGGCTGTGGA AGGGATGCAC AGAGAACTTG TGTTCCGGTT TATTGAAGTT CAGACACTTC
2641TCCTCGCTCC ATTCTGTCCA CATTTGTGTG AGCACATCTG GACACTCCTG GGAAAGCCTG
2701ACTCAATTAT GAATGCTTCA TGGCCTGTGG CAGGTCCTGT TAATGAAGTT TTAATACACT
2761CCTCACAGTA TCTTATGGAA GTAACACATG ACCTTAGACT ACGACTCAAG AACTATATGA
2821TGCCAGCTAA AGGGAAGAAG ACTGACAAAC AACCCCTGCA GAAGCCCTCA CATTGCACCA
2881TCTATGTGGC AAAGAACTAT CCACCTTGGC AACATACCAC CCTGTCTGTT CTACGTAAAC
2941ACTTTGAGGC CAATAACGGA AAACTGCCTG ACAACAAAGT CATTGCTAGT GAACTAGGCA
3001GTATGCCAGA ACTGAAGAAA TACATGAAGA AAGTCATGCC ATTTGTTGCC ATGATTAAGG
3061AAAATCTGGA GAAGATGGGG CCTCGTATTC TGGATTTGCA ATTAGAATTT GATGAAAAGG
3121CTGTGCTTAT GGAGAATATA GTCTATCTGA CTAATTCGCT TGAGCTAGAA CACATAGAAG
3181TCAAGTTTGC CTCCGAAGCA GAAGATAAAA TCAGGGAAGA CTGCTGTCCT GGGAAACCAC
3241TTAATGTTTT TAGAATAGAA CCTGGTGTGT CCGTTTCTCT GGTGAATCCC CAGCCATCCA
3301ATGGCCACTT CTCAACCAAA ATTGAAATCA GGCAAGGAGA TAACTGTGAT TCCATAATCA
3361GGCGTTTAAT GAAAATGAAT CGAGGAATTA AAGACCTTTC CAAAGTGAAA CTGATGAGAT
3421TTGATGATCC ACTGTTGGGG CCTCGACGAG TTCCTGTCCT GGGAAAGGAG TACACCGAGA
3481AGACCCCCAT TTCTGAGCAT GCTGTTTTCA ATGTGGACCT CATGAGCAAG AAAATTCATC
3541TGACTGAGAA TGGGATAAGG GTGGATATTG GCGATACAAT AATCTATCTG GTTCATTTGC
3601CAACTTTCTT GTACAAAGTT GGcattataa gaaagcattg cttatcaatt tgttgcaacg
3661aac

Download FASTA (ORF) (Full)

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