Construct: ORF ccsbBroadEn_03332

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014826.1_s300c1, BRDN0000385195
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SIRT6 (51548)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51548 SIRT6 sirtuin 6 NM_016539.4 100% 100%
2 human 51548 SIRT6 sirtuin 6 NM_001193285.3 92.3% 92.3% 529_530ins81
3 human 51548 SIRT6 sirtuin 6 XM_024451539.1 86.9% 78.2% (many diffs)
4 human 51548 SIRT6 sirtuin 6 NM_001321059.2 82.8% 82.8% 191_192ins183
5 human 51548 SIRT6 sirtuin 6 NM_001321058.2 79.7% 79.7% 0_1ins216
6 human 51548 SIRT6 sirtuin 6 NM_001321061.2 72.1% 72.1% 0_1ins216;313_314ins81
7 human 51548 SIRT6 sirtuin 6 NM_001321060.2 69.8% 56.4% 610_611ins40;744_745ins281
8 human 51548 SIRT6 sirtuin 6 NM_001321062.2 61.9% 61.9% 0_1ins405
9 human 51548 SIRT6 sirtuin 6 NM_001321063.2 52.6% 40.1% 191_192ins183;427_428ins40;561_562ins281
10 human 51548 SIRT6 sirtuin 6 NM_001321064.1 49.5% 37.1% 0_1ins216;394_395ins40;528_529ins281
11 human 51548 SIRT6 sirtuin 6 XM_024451540.1 49.5% 37.1% 0_1ins216;394_395ins40;528_529ins281
12 mouse 50721 Sirt6 sirtuin 6 NM_181586.3 78.7% 83.3% (many diffs)
13 mouse 50721 Sirt6 sirtuin 6 NM_001163430.1 69.1% 72.1% (many diffs)
14 mouse 50721 Sirt6 sirtuin 6 XM_006513861.4 68% 72% (many diffs)
15 mouse 50721 Sirt6 sirtuin 6 XM_011243507.3 43% 47.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1131
ORF length:
1065
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC GGTGAATTAC GCGGCGGGGC TGTCGCCGTA CGCGGACAAG GGCAAGTGCG
121GCCTCCCGGA GATCTTCGAC CCCCCGGAGG AGCTGGAGCG GAAGGTGTGG GAACTGGCGA
181GGCTGGTCTG GCAGTCTTCC AGTGTGGTGT TCCACACGGG TGCCGGCATC AGCACTGCCT
241CTGGCATCCC CGACTTCAGG GGTCCCCACG GAGTCTGGAC CATGGAGGAG CGAGGTCTGG
301CCCCCAAGTT CGACACCACC TTTGAGAGCG CGCGGCCCAC GCAGACCCAC ATGGCGCTGG
361TGCAGCTGGA GCGCGTGGGC CTCCTCCGCT TCCTGGTCAG CCAGAACGTG GACGGGCTCC
421ATGTGCGCTC AGGCTTCCCC AGGGACAAAC TGGCAGAGCT CCACGGGAAC ATGTTTGTGG
481AAGAATGTGC CAAGTGTAAG ACGCAGTACG TCCGAGACAC AGTCGTGGGC ACCATGGGCC
541TGAAGGCCAC GGGCCGGCTC TGCACCGTGG CTAAGGCAAG GGGGCTGCGA GCCTGCAGGG
601GAGAGCTGAG GGACACCATC CTAGACTGGG AGGACTCCCT GCCCGACCGG GACCTGGCAC
661TCGCCGATGA GGCCAGCAGG AACGCCGACC TGTCCATCAC GCTGGGTACA TCGCTGCAGA
721TCCGGCCCAG CGGGAACCTG CCGCTGGCTA CCAAGCGCCG GGGAGGCCGC CTGGTCATCG
781TCAACCTGCA GCCCACCAAG CACGACCGCC ATGCTGACCT CCGCATCCAT GGCTACGTTG
841ACGAGGTCAT GACCCGGCTC ATGAAGCACC TGGGGCTGGA GATCCCCGCC TGGGACGGCC
901CCCGTGTGCT GGAGAGGGCG CTGCCACCCC TGCCCCGCCC GCCCACCCCC AAGCTGGAGC
961CCAAGGAGGA ATCTCCCACC CGGATCAACG GCTCTATCCC CGCCGGCCCC AAGCAGGAGC
1021CCTGCGCCCA GCACAACGGC TCAGAGCCCG CCAGCCCCAA ACGGGAGCGG CCCACCAGCC
1081CTGCCCCCCA CAGACCCCCC AAAAGGGTGA AGGCCAAGGC GGTCCCCAGC TGCCCAACTT
1141TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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