Construct: ORF ccsbBroadEn_03373
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009205.1_s300c1, BRDN0000398129
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FBXO40 (51725)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51725 | FBXO40 | F-box protein 40 | NM_016298.4 | 100% | 100% | |
| 2 | mouse | 207215 | Fbxo40 | F-box protein 40 | NM_001037321.1 | 84.4% | 84.6% | (many diffs) |
| 3 | mouse | 207215 | Fbxo40 | F-box protein 40 | XM_006521881.2 | 84.4% | 84.6% | (many diffs) |
| 4 | mouse | 207215 | Fbxo40 | F-box protein 40 | XM_006521882.3 | 84.4% | 84.6% | (many diffs) |
| 5 | mouse | 207215 | Fbxo40 | F-box protein 40 | XM_006521883.3 | 78.9% | 79.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2196
- ORF length:
- 2127
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGGAAAGCC CGCAGATCCC CGCCAGGGCA CCACAGGCAT TGTGAGGGAT 121 GCTTCAACCG CCACTGCCAC ATTCCTGTGG AACCCAACAC CTCCTGCCTG GTAATAAGCT 181 GCCACCTGCT CTGTGGTGCC ACCTTCCACA TGTGCAAAGA GGCAGAGCAC CAGCTCCTCT 241 GCCCTTTAGA GCAGGTTCCG TGCCTCAACT CCGAATATGG CTGCCCTCTG TCCATGTCCC 301 GCCACAAACT GGCCAAGCAC CTGCAGGTGT GCCCCGCCAG CGTGGTCTGC TGCTCCATGG 361 AGTGGAACCG CTGGCCAAAT GTGGACTCTG AAACCACCCT TCATGAAAAC ATCATGAAAG 421 AGACCCCCAG TGAGGAGTGT TTGGACACAG CCCTGGCCCT GCAGGATCAG AAGGTCCTCT 481 TCAGATCCTT GAAAATGGTG GAACTTTTCC CAGAAACTAG AGAGGCTACT GAGGAGGAAC 541 CAACTATGAA TGGTGAAACC AGTGTGGAGG AAATGGGAGG AGCAGTGGGT GGAGTGGATA 601 TCGGTTTGGT ACCACATGGT CTGTCAGCAA CTAATGGGGA GATGGCAGAG CTAAGTCAAG 661 AAGAACGGGA GGTGCTAGCC AAAACCAAAG AAGGGATGGA CCTGGTCAAG TTTGGCCAGT 721 GGGAAAATAT TTTCAGCAAA GAGCACGCAG CCTCTGCTTT AACAAATTCA TCAGCGAGCT 781 GTGAGAGCAA GAACAAGAAT GACTCCGAGA AAGAACAGAT TTCCAGTGGC CATAACATGG 841 TAGAAGGAGA GGGCGCTCCC AAAAAGAAAG AACCACAGGA AAATCAGAAG CAGCAGGACG 901 TTCGTACAGC CATGGAAACC ACAGGGCTTG CCCCTTGGCA GGATGGTGTT CTGGAAAGAC 961 TGAAAACAGC TGTGGATGCA AAGGACTATA ACATGTATCT AGTGCACAAT GGGCGGATGC 1021 TGATACACTT TGGTCAGATG CCTGCTTGTA CACCCAAGGA GAGAGACTTT GTTTATGGCA 1081 AGCTGGAGGC TCAGGAAGTT AAGACTGTTT ACACCTTCAA AGTTCCTGTG AGCTACTGTG 1141 GAAAGCGAGC TCGACTTGGA GATGCCATGT TGAGTTGTAA GCCAAGTGAA CACAAGGCAG 1201 TGGATACTTC AGATTTGGGG ATCACTGTGG AGGACCTGCC CAAATCAGAT CTCATCAAGA 1261 CCACCCTCCA GTGTGCTTTG GAAAGAGAAC TCAAAGGCCA CGTCATCTCT GAATCCAGAA 1321 GCATTGATGG ACTGTTCATG GATTTTGCCA CACAAACATA CAACTTTGAG CCAGAACAGT 1381 TTTCCTCTGG GACAGTGCTG GCTGACCTAA CCGCTGCCAC CCCAGGGGGA CTCCACGTGG 1441 AGCTCCACAG CGAGTGTGTG ACCAGGAGAC ACAACAAAAG CAGCTCTGCC TTCACTTTCA 1501 CTTGCAACAA ATTCTTCAGG AGGGATGAGT TCCCCCTGCA CTTCAAGAAT GTCCACACAG 1561 ACATTCAGTC ATGTCTCAAT GGCTGGTTCC AGCATCGATG CCCCCTCGCC TACTTGGGAT 1621 GTACATTTGT TCAAAACCAT TTCCGTCCCC CAGGGCAAAA GGCAAAAGTA ATCTATAGCC 1681 AGGAGCTCAA GACCTTTGCC ATTAAGCCGG AGGTTGCTCC AGAGCTGAGC GAGGGAAGGA 1741 AGAACAACCA TCTTTTGGGT CATGGAGGAA AAAGCCAGAA TTCTTTAACC AGCCTGCCCC 1801 TGGAGATTTT GAAGTACATT GCTGGGTTCT TGGACAGCGT CAGCCTGGCC CAGCTCTCCC 1861 AGGTGTCTGT GCTGATGAGG AATATCTGTG CCACTTTGTT ACAAGAGAGA GGAATGGTCC 1921 TTTTGCAATG GAAGAAAAAG AGGTATTCCC ATGGAGGCAC CTCCTGGAGA GTCCACAGAG 1981 AGATCTGGCA GTTCAGCAGC CTCTTCTCCA AAATCAAGAG CTGGGAGTTT AATGAAGTCA 2041 CCTCCATGTC TGAGCACCTG AAGTCCTGTC CTTTCAACAT TGTAGAGCAC AAAACTGACC 2101 CGATTCTTTT GACTAGCATG TGTCAGCCCC GTGAGCAGGC CCGAGAGAGC TTAGTCTCCA 2161 CCTTTAGAAT CAGACCACGA GGAAGATACG TCTCCTTGCC AACTTTCTTG TACAAAGTtg 2221 gcattataag aaagcattgc ttatcaattt gttgcaacga ac