Construct: ORF ccsbBroadEn_03521
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002548.1_s300c1, BRDN0000390718
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SAMD4B (55095)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55095 | SAMD4B | sterile alpha motif domain ... | NM_018028.3 | 100% | 100% | |
| 2 | human | 55095 | SAMD4B | sterile alpha motif domain ... | XM_011527063.2 | 100% | 100% | |
| 3 | human | 55095 | SAMD4B | sterile alpha motif domain ... | XM_017026920.1 | 100% | 100% | |
| 4 | human | 55095 | SAMD4B | sterile alpha motif domain ... | XM_017026921.1 | 100% | 100% | |
| 5 | human | 55095 | SAMD4B | sterile alpha motif domain ... | XM_017026922.2 | 99.1% | 97.7% | (many diffs) |
| 6 | human | 55095 | SAMD4B | sterile alpha motif domain ... | XM_017026923.2 | 99.1% | 97.7% | (many diffs) |
| 7 | human | 55095 | SAMD4B | sterile alpha motif domain ... | NM_001303614.1 | 99.1% | 98.7% | (many diffs) |
| 8 | human | 55095 | SAMD4B | sterile alpha motif domain ... | XM_011527064.2 | 99.1% | 98.7% | (many diffs) |
| 9 | human | 55095 | SAMD4B | sterile alpha motif domain ... | XM_011527057.2 | 97.4% | 97.1% | (many diffs) |
| 10 | human | 55095 | SAMD4B | sterile alpha motif domain ... | XM_011527060.3 | 97.4% | 97.1% | (many diffs) |
| 11 | human | 55095 | SAMD4B | sterile alpha motif domain ... | XM_011527061.3 | 97.4% | 97.1% | (many diffs) |
| 12 | human | 55095 | SAMD4B | sterile alpha motif domain ... | XM_011527062.2 | 97.4% | 97.1% | (many diffs) |
| 13 | human | 55095 | SAMD4B | sterile alpha motif domain ... | XM_017026918.1 | 97.4% | 97.1% | (many diffs) |
| 14 | human | 55095 | SAMD4B | sterile alpha motif domain ... | XM_017026919.1 | 97.4% | 97.1% | (many diffs) |
| 15 | mouse | 233033 | Samd4b | sterile alpha motif domain ... | NM_175021.3 | 92% | 96.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2148
- ORF length:
- 2082
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAT GTTCCGAGAC CAGGTGGGCA TCCTCGCTGG CTGGTTCAAA GGCTGGAATG 121 AGTGTGAGCA GACAGTGGCC CTCCTGTCAC TTCTGAAACG GGTCACCCGT ACCCAGGCCC 181 GCTTCCTGCA GCTCTGCCTG GAGCACTCAC TGGCGGACTG CAATGACATC CACCTGCTGG 241 AGTCGGAGGC CAACAGTGCT GCCATCGTCA GCCAGTGGCA GCAGGAGTCC AAAGAGAAGG 301 TGGTGTCCCT CCTGCTGTCC CACCTTCCCC TGCTTCAGCC AGGCAACACA GAGGCCAAGT 361 CGGAGTACAT GAGGCTACTG CAGAAAGTGC TGGCCTACTC AATCGAGAGC AATGCTTTCA 421 TCGAGGAGAG TCGCCAGCTG CTTTCCTATG CCCTCATCCA CCCAGCCACC ACACTGGAGG 481 ACCGCAACGC ACTGGCCCTC TGGCTGAGCC ACCTGGAAGA GCGGTTGGCT AGTGGCTTCC 541 GCTCCCGGCC AGAGCCCTCC TACCATTCAC GTCAAGGCTC AGATGAGTGG GGGGGCCCTG 601 CAGAGCTAGG CCCTGGGGAG GCAGGGCCAG GCTGGCAGGA CAAGCCACCC CGGGAAAATG 661 GACACGTGCC CTTCCACCCA TCCAGCTCAG TGCCGCCAGC CATCAACAGT ATTGGGAGCA 721 ATGCAAACAC AGGTCTCCCC TGCCAAATCC ACCCTAGCCC ACTGAAGCGC TCCATGTCAC 781 TCATCCCTAC AAGCCCCCAG GTCCCTGGTG AGTGGCCGAG TCCAGAGGAG CTTGGGGCCC 841 GGGCTGCTTT TACCACGCCC GATCACGCAC CTCTCTCGCC CCAGAGCAGC GTGGCCTCCT 901 CTGGCAGTGA GCAGACAGAG GAGCAGGGCT CCAGCCGGAA CACCTTCCAG GAGGATGGCA 961 GTGGCATGAA AGATGTGCCC TCATGGCTCA AGAGCCTCCG TTTGCACAAG TATGCAGCCC 1021 TCTTCTCACA GATGAGCTAC GAGGAGATGA TGACACTGAC TGAGCAGCAC CTGGAGTCTC 1081 AGAACGTCAC CAAAGGTGCC CGCCACAAGA TAGCCCTGAG CATCCAGAAG CTGCGTGAGA 1141 GACAGAGCGT CCTCAAGTCC CTAGAGAAGG ATGTGCTGGA AGGCGGGAAC CTACGAAACG 1201 CTCTGCAGGA GCTGCAGCAG ATCATCATCA CTCCCATCAA GGCCTACAGT GTCCTCCAGG 1261 CCACCGTGGC TGCCGCCACC ACCACCCCTA CTGCCAAGGA TGGGGCCCCG GGGGAACCAC 1321 CGCTGCCAGG TGCTGAGCCT CCCCTAGCCC ACCCCGGCAC AGACAAAGGC ACCGAGGCCA 1381 AGGACCCTCC AGCTGTGGAG AACTACCCAC CTCCACCAGC TCCAGCTCCC ACTGATGGCA 1441 GTGAGCCTGC CCCGGCTCCC GTCGCCGACG GAGACATCCC CAGCCAGTTT ACACGGGTGA 1501 TGGGCAAAGT GTGCACCCAA CTGCTGGTGT CCCGACCAGA CGAGGAGAAC ATCACCAGTT 1561 ACCTCCAGCT CATCGAAAAG TGCCTGACTC ATGAGGCTTT CACGGAGACG CAGAAGAAAC 1621 GGCTGCTATC CTGGAAACAG CAAGTGCTGA AGCTCCTCCG GACATTCCCG CGCAAAGCCG 1681 CACTAGAGAT GCAGAACTAC CGGCAGCAGA AAGGCTGGGC ATTCGGCTCC AACTCGCTCC 1741 CCATAGCTGG CTCTGTGGGG ATGGGAGTGG CCCGGCGTAC CCAGCGGCAG TTCCCAATGC 1801 CTCCCCGGGC CCTCCCACCC GGCCGGATGG GCCTCCTGAG CCCCTCGGGC ATTGGGGGTG 1861 TCTCCCCTCG ACATGCCCTC ACCAGCCCCA GCCTTGGAGG CCAGGGCCGA CAGAACCTGT 1921 GGTTTGCCAA CCCTGGAGGC AGCAACAGCA TGCCCAGTCA GAGCCGCAGC TCTGTGCAGC 1981 GCACCCACTC GCTCCCGGTC CACTCGTCAC CCCAGGCCAT TCTCATGTTC CCTCCAGACT 2041 GCCCGGTTCC TGGGCCTGAC CTGGAGATCA ATCCCACTCT GGAGTCTCTG TGTCTGAGCA 2101 TGACAGAACA CGCCTTGGGT GATGGGACAG ACAAAACCTC CACCATCTGC CCAACTTTCT 2161 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac