Construct: ORF ccsbBroadEn_03558
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012855.1_s300c1, BRDN0000385342
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC38A7 (55238)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55238 | SLC38A7 | solute carrier family 38 me... | NM_001369608.1 | 100% | 100% | |
| 2 | human | 55238 | SLC38A7 | solute carrier family 38 me... | NM_001369609.1 | 100% | 100% | |
| 3 | human | 55238 | SLC38A7 | solute carrier family 38 me... | NM_001369611.1 | 100% | 100% | |
| 4 | human | 55238 | SLC38A7 | solute carrier family 38 me... | NM_018231.3 | 100% | 100% | |
| 5 | human | 55238 | SLC38A7 | solute carrier family 38 me... | XM_017023395.2 | 76.4% | 74.6% | 1030_1031ins200;1059_1060ins127 |
| 6 | human | 55238 | SLC38A7 | solute carrier family 38 me... | XM_017023396.2 | 74.8% | 74.8% | 880_881ins348 |
| 7 | human | 55238 | SLC38A7 | solute carrier family 38 me... | XM_017023398.2 | 67.4% | 61.6% | (many diffs) |
| 8 | human | 55238 | SLC38A7 | solute carrier family 38 me... | NM_001308384.2 | 67% | 63.1% | 880_881ins403;984_1062del |
| 9 | human | 55238 | SLC38A7 | solute carrier family 38 me... | NM_001369610.1 | 67% | 63.1% | 880_881ins403;984_1062del |
| 10 | human | 55238 | SLC38A7 | solute carrier family 38 me... | XM_017023399.2 | 52.9% | 50.1% | (many diffs) |
| 11 | human | 55238 | SLC38A7 | solute carrier family 38 me... | XR_001751952.2 | 33.6% | 1_393del;1159_1225del;1847_4125del | |
| 12 | human | 55238 | SLC38A7 | solute carrier family 38 me... | NR_161424.1 | 32.7% | 1_393del;1623_1797del;1955_4233del | |
| 13 | mouse | 234595 | Slc38a7 | solute carrier family 38, m... | NM_172758.4 | 89.2% | 94.8% | (many diffs) |
| 14 | mouse | 234595 | Slc38a7 | solute carrier family 38, m... | XM_006530876.3 | 89.2% | 94.8% | (many diffs) |
| 15 | mouse | 234595 | Slc38a7 | solute carrier family 38, m... | XM_006530877.2 | 89.2% | 94.8% | (many diffs) |
| 16 | mouse | 234595 | Slc38a7 | solute carrier family 38, m... | XM_006530878.1 | 66.2% | 70.1% | (many diffs) |
| 17 | mouse | 234595 | Slc38a7 | solute carrier family 38, m... | XM_011248357.1 | 55.1% | 52.3% | (many diffs) |
| 18 | mouse | 234595 | Slc38a7 | solute carrier family 38, m... | XM_006530879.1 | 45.5% | 48.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1452
- ORF length:
- 1386
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CCAGGTCAGC ATCAACAATG ACTACAGCGA GTGGGACTTG AGCACGGATG 121 CCGGGGAGCG GGCTCGGCTG CTGCAGAGTC CCTGTGTGGA CACAGCCCCC AAGAGTGAGT 181 GGGAAGCCTC TCCTGGGGGT CTGGACAGAG GCACCACTTC CACACTTGGG GCCATCTTCA 241 TCGTCGTCAA CGCGTGCCTG GGTGCAGGGT TACTCAACTT CCCAGCAGCC TTCAGCACTG 301 CGGGGGGCGT GGCAGCAGGC ATCGCACTGC AGATGGGTAT GCTGGTTTTC ATCATCAGTG 361 GCCTTGTCAT CCTGGCCTAC TGCTCCCAGG CCAGCAATGA GAGGACCTAC CAGGAGGTGG 421 TATGGGCTGT GTGTGGCAAG CTGACAGGTG TGCTATGTGA GGTGGCCATC GCTGTCTACA 481 CCTTTGGCAC CTGCATTGCC TTCCTAATCA TCATTGGCGA CCAGCAGGAC AAGATTATAG 541 CTGTGATGGC GAAAGAGCCG GAGGGGGCCA GCGGCCCTTG GTACACAGAC CGCAAGTTCA 601 CCATCAGCCT CACTGCCTTC CTCTTCATCC TGCCCCTCTC CATCCCCAGG GAGATTGGTT 661 TCCAGAAATA TGCCAGCTTC CTGAGCGTCG TGGGTACCTG GTACGTCACA GCCATCGTTA 721 TCATCAAGTA CATCTGGCCA GATAAAGAGA TGACCCCAGG GAACATCCTG ACCAGGCCGG 781 CTTCCTGGAT GGCTGTGTTC AATGCCATGC CCACCATCTG CTTCGGATTT CAGTGCCACG 841 TCAGCAGTGT GCCCGTCTTC AACAGCATGC AGCAGCCTGA AGTGAAGACC TGGGGTGGAG 901 TGGTGACAGC TGCCATGGTC ATAGCCCTCG CTGTCTACAT GGGGACAGGC ATCTGTGGCT 961 TCCTGACCTT TGGAGCTGCT GTGGATCCTG ACGTGCTCCT GTCCTATCCC TCGGAGGACA 1021 TGGCCGTGGC CGTTGCCCGA GCCTTCATCA TCCTGAGCGT GCTCACCTCC TACCCTATCC 1081 TGCACTTCTG TGGGCGGGCG GTGGTGGAAG GCCTGTGGCT GCGCTACCAG GGGGTGCCAG 1141 TGGAGGAGGA CGTGGGGCGG GAGCGGCGGC GGCGAGTGCT GCAGACGCTG GTCTGGTTCC 1201 TGCTCACCCT GCTGCTGGCG CTCTTCATCC CTGACATCGG CAAGGTGATC TCAGTCATTG 1261 GAGGCCTGGC CGCCTGCTTC ATCTTCGTCT TCCCAGGGCT GTGCCTCATT CAAGCCAAAC 1321 TCTCTGAGAT GGAAGAGGTC AAACCAGCCA GCTGGTGGGT GCTGGTCAGC TACGGAGTCC 1381 TCTTGGTCAC CCTGGGAGCC TTCATCTTCG GCCAGACCAC AGCCAACGCC ATCTTTGTGG 1441 ATCTCTTGGC ATACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 1501 caatttgttg caacgaac