Construct: ORF ccsbBroadEn_03562

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006981.1_s300c1, BRDN0000393894
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
YY1AP1 (55249)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55249 YY1AP1 YY1 associated protein 1 NM_001198901.1 100% 100%
2 human 55249 YY1AP1 YY1 associated protein 1 NM_001198902.1 100% 100%
3 human 55249 YY1AP1 YY1 associated protein 1 NM_139119.2 100% 100%
4 human 55249 YY1AP1 YY1 associated protein 1 NM_001198899.1 98.5% 98.5% 0_1ins33
5 human 55249 YY1AP1 YY1 associated protein 1 NM_001198900.1 98.5% 98.5% 0_1ins33
6 human 55249 YY1AP1 YY1 associated protein 1 NM_018253.3 98.5% 98.5% 0_1ins33
7 human 55249 YY1AP1 YY1 associated protein 1 NM_001198905.1 97.3% 97.3% 728_729ins60
8 human 55249 YY1AP1 YY1 associated protein 1 NM_139121.2 91.2% 91.2% 0_1ins198
9 human 55249 YY1AP1 YY1 associated protein 1 NM_139118.2 89.4% 89.4% 1_198del;926_927ins60
10 human 55249 YY1AP1 YY1 associated protein 1 NM_001198903.1 84.4% 84.4% 1_414del
11 human 55249 YY1AP1 YY1 associated protein 1 NM_001198904.1 82.2% 82.2% 1_414del;1142_1143ins60
12 human 54856 GON4L gon-4 like NM_001282861.2 47.2% 45.6% (many diffs)
13 human 54856 GON4L gon-4 like NM_032292.6 47.2% 45.6% (many diffs)
14 human 55249 YY1AP1 YY1 associated protein 1 NM_001198906.2 42.7% 40.3% 1_198del;1193_1212del;1272_1273ins1196
15 human 54856 GON4L gon-4 like XM_005245284.3 34.9% 33.7% (many diffs)
16 human 54856 GON4L gon-4 like XM_011509659.2 34.9% 33.7% (many diffs)
17 human 54856 GON4L gon-4 like NM_001282858.2 32.2% 31.1% (many diffs)
18 human 54856 GON4L gon-4 like XM_006711393.3 32.2% 31.1% (many diffs)
19 human 54856 GON4L gon-4 like XM_006711394.4 32.2% 31.1% (many diffs)
20 human 54856 GON4L gon-4 like NM_001282856.1 32.2% 31.1% (many diffs)
21 human 54856 GON4L gon-4 like NM_001282860.1 32.2% 31.1% (many diffs)
22 human 54856 GON4L gon-4 like XM_005245286.3 31.3% 30.2% (many diffs)
23 human 54856 GON4L gon-4 like XM_011509658.2 31% 30% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2316
ORF length:
2250
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA AGATCTGTTT GAAACTTTCC AAGATGAGAT GGGATTCTCC AACATGGAAG
121ATGATGGCCC AGAAGAGGAG GAGCGTGTGG CTGAGCCTCA AGCTAACTTT AACACCCCTC
181AAGCTCTACG GTTTGAGGAA CTACTGGCCA ACCTACTAAA TGAACAACAT CAGATAGCGA
241AGGAACTATT TGAACAGCTG AAGATGAAGA AACCTTCAGC CAAACAGCAG AAGGAGGTAG
301AGAAGGTTAA ACCCCAGTGT AAGGAAGTTC ATCAGACCCT GATTCTGGAC CCAGCACAAA
361GGAAGAGACT CCAGCAGCAG ATGCAGCAGC ATGTTCAGCT CTTGACACAA ATCCACCTTC
421TTGCCACCTG CAACCCCAAT CTCAATCCGG AGGCCAGTAG CACCAGGATA TGTCTTAAAG
481AGCTGGGAAC CTTTGCTCAA AGCTCCATCG CCCTTCACCA TCAGTACAAC CCCAAGTTTC
541AGACCCTGTT CCAACCCTGT AACTTGATGG GAGCTATGCA GCTGATTGAA GACTTCAGCA
601CACATGTCAG CATTGACTGC AGCCCTCATA AAACTGTCAA GAAGACTGCC AATGAATTTC
661CCTGTTTGCC AAAGCAAGTG GCTTGGATCC TGGCCACAAG CAAGGTTTTC ATGTATCCAG
721AGTTACTTCC AGTGTGTTCC CTGAAGGCAA AGAATCCCCA GGATAAGATC CTCTTCACCA
781AGGCTGAGGA CAATTTGTTA GCTTTAGGAC TGAAGCATTT TGAAGGGACT GAGTTTCTTA
841ACCCTCTAAT CAGCAAGTAC CTTCTAACCT GCAAGACTGC CCGCCAACTG ACAGTGAGAA
901TCAAGAACCT CAACATGAAC AGAGCTCCTG ACAACATCAT TAAATTTTAT AAGAAGACCA
961AACAGCTGCC AGTCCTAGGA AAATGCTGTG AAGAGATCCA GCCACATCAG TGGAAGCCAC
1021CTATAGAGAG AGAAGAACAC CGGCTCCCAT TCTGGTTAAA GGCCAGTCTG CCATCCATCC
1081AGGAAGAACT GCGGCACATG GCTGATGGTG CTAGAGAGGT AGGAAATATG ACTGGAACCA
1141CTGAGATCAA CTCAGATCAA GGCCTAGAAA AAGACAACTC AGAGTTGGGG AGTGAAACTC
1201GGTACCCACT GCTATTGCCT AAGGGTGTAG TCCTGAAACT GAAGCCAGTT GCCGACCGTT
1261TCCCCAAGAA GGCTTGGAGA CAGAAGCGTT CATCAGTCCT GAAACCCCTC CTTATCCAAC
1321CCAGCCCCTC TCTCCAGCCC AGCTTCAACC CTGGGAAAAC ACCAGCCCAA TCAACTCATT
1381CAGAAGCCCC TCCGAGCAAA ATGGTGCTCC GGATTCCTCA CCCAATACAG CCAGCCACTG
1441TTTTACAGAC AGTTCCAGGT GTCCCTCCAC TGGGGGTCAG TGGAGGTGAG AGTTTTGAGT
1501CTCCTGCAGC ACTGCCTGCT ATGCCCCCTG AGGCCAGGAC AAGCTTCCCT CTGTCTGAGT
1561CCCAGACTTT GCTCTCTTCT GCCCCTGTGC CCAAGGTAAT GATGCCCTCC CCTGCCTCTT
1621CCATGTTTCG AAAGCCATAT GTGAGACGGA GACCCTCAAA AAGAAGGGGA GCCAGGGCCT
1681TTCGCTGTAT CAAACCTGCC CCTGTTATCC ACCCTGCATC TGTTATCTTC ACTGTTCCTG
1741CTACCACTGT GAAGATTGTG AGCCTTGGCG GTGGCTGTAA CATGATCCAG CCTGTCAATG
1801CGGCTGTGGC CCAGAGTCCC CAGACTATTC CCATCGCCAC CCTCTTGGTT AACCCTACTT
1861CCTTCCCCTG TCCATTGAAC CAGCCCCTTG TGGCCTCCTC TGTCTCACCC TTAATTGTTT
1921CTGGCAATTC TGTGAATCTT CCTATACCAT CCACCCCTGA AGATAAGGCC CACATGAATG
1981TGGACATTGC TTGTGCTGTG GCTGATGGGG AAAATGCCTT TCAGGGCCTA GAACCCAAAT
2041TAGAGCCCCA GGAACTATCT CCTCTCTCTG CTACTGTTTT CCCCAAAGTG GAACATAGCC
2101CAGGGCCTCC ACCAGTCGAT AAACAGTGCC AAGAAGGATT GTCAGAGAAC AGTGCCTATC
2161GCTGGACCGT TGTGAAAACA GAGGAGGGAA GGCAAGCTCT GGAGCCGCTC CCTCAGGGCA
2221TCCAGGAGTC TCTAAACAAC TCTTCCCCTG GGGATTTAGA GGAAGTTGTC AAGATGGAAC
2281CTGAAGATGC TACAGAGGAA ATCAGTGGAT TTCTTTGCCC AACTTTCTTG TACAAAGTtg
2341gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)

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