Construct: ORF ccsbBroadEn_03564

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000440.1_s300c1, BRDN0000389612
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
WDR41 (55255)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55255 WDR41 WD repeat domain 41 NM_018268.4 100% 100%
2 human 55255 WDR41 WD repeat domain 41 XM_011543505.2 97.9% 95.9% (many diffs)
3 human 55255 WDR41 WD repeat domain 41 XM_017009606.1 97.8% 96.9% (many diffs)
4 human 55255 WDR41 WD repeat domain 41 XM_005248551.4 87.3% 87.3% 522_523ins174
5 human 55255 WDR41 WD repeat domain 41 XM_005248552.3 79.9% 79.9% 1101_1102ins276
6 human 55255 WDR41 WD repeat domain 41 XM_011543507.2 73.1% 72.9% 1006_1008delTTTinsCAG;1011_1011delTins367
7 human 55255 WDR41 WD repeat domain 41 XR_001742140.1 60% 1_287del;1665_2292del
8 human 55255 WDR41 WD repeat domain 41 XR_001742141.1 31.9% 1_287del;1379_1400del;1687_4304del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1443
ORF length:
1377
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT GCGATGGCTG ATCGGGGGAG GCCGAGAACC GCAGGGACTG GCCGAGAAAT
121CTCCTTTACA GACAATAGGT GAAGAACAAA CCCAGAATCC CTACACTGAA CTGCTAGTAC
181TGAAGGCTCA TCATGATATT GTACGATTTC TGGTACAGTT AGATGACTAC AGATTTGCAT
241CTGCTGGTGA TGATGGAATT GTAGTTGTGT GGAATGCCCA GACAGGGGAA AAACTTTTAG
301AACTGAATGG ACACACTCAA AAGATAACAG CTATTATTAC ATTTCCTTCC TTGGAATCTT
361GTGAAGAGAA AAATCAACTC ATCTTGACAG CCTCTGCTGA TAGAACAGTT ATTGTGTGGG
421ATGGTGATAC TACCAGACAA GTTCAGAGAA TATCATGCTT CCAGTCTACT GTAAAGTGTT
481TAACTGTTCT TCAGAGACTA GATGTTTGGC TTTCTGGTGG GAATGACCTG TGTGTGTGGA
541ACCGAAAATT AGATCTCCTG TGTAAGACTA GCCACCTTTC TGATACAGGT ATTAGTGCTT
601TGGTTGAAAT ACCTAAGAAC TGTGTTGTGG CAGCAGTTGG CAAAGAACTG ATAATTTTCA
661GGTTGGTAGC ACCCACAGAA GGATCACTAG AATGGGATAT TCTTGAAGTT AAGCGCCTCC
721TTGATCACCA GGATAATATT CTCTCATTGA TTAATGTCAA TGATTTGAGT TTTGTCACCG
781GCTCCCACGT CGGAGAGCTG ATCATCTGGG ATGCCCTGGA CTGGACCATG CAGGCCTATG
841AACGCAACTT CTGGGACCCA TCTCCACAAC TGGACACCCA ACAAGAAATA AAACTCTGTC
901AAAAATCAAA TGACATTTCT ATTCATCATT TCACATGTGA TGAAGAGAAT GTATTTGCTG
961CAGTTGGAAG GGGTTTATAC GTGTATAGCC TTCAAATGAA GCGTGTGATT GCCTGCCAGA
1021AAACTGCACA TGACTCCAAT GTCCTGCACG TTGCCAGACT TCCAAACAGG CAGTTAATCT
1081CATGCTCAGA AGATGGCAGT GTACGCATTT GGGAGTTAAG AGAAAAACAG CAGCTTGCAG
1141CTGAGCCTGT ACCAACAGGT TTTTTTAACA TGTGGGGATT TGGAAGAGTC AGCAAACAAG
1201CCAGCCAACC TGTTAAAAAG CAGCAAGAAA ATGCTACTTC ATGTTCACTG GAGCTTATTG
1261GAGATTTGAT TGGACACTCA TCATCTGTGG AGATGTTTCT ATACTTTGAA GATCATGGAC
1321TAGTGACGTG CTCCGCTGAT CATCTCATTA TTTTGTGGAA AAATGGAGAG CGAGAATCTG
1381GATTGCGCAG TTTAAGATTA TTTCAAAAAT TAGAGGAGAA TGGTGACTTA TACCTTGCTG
1441TCTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
1501gcaacgaac

Download FASTA (ORF) (Full)