Construct: ORF ccsbBroadEn_03575
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003433.1_s300c1, BRDN0000396783
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TBC1D19 (55296)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55296 | TBC1D19 | TBC1 domain family member 19 | NM_018317.4 | 99.9% | 100% | 681A>G |
| 2 | human | 55296 | TBC1D19 | TBC1 domain family member 19 | XM_017008363.1 | 95.6% | 95.3% | (many diffs) |
| 3 | human | 55296 | TBC1D19 | TBC1 domain family member 19 | NM_001292054.1 | 87.6% | 87.6% | 98_99ins195 |
| 4 | human | 55296 | TBC1D19 | TBC1 domain family member 19 | XR_925335.3 | 86.5% | (many diffs) | |
| 5 | human | 55296 | TBC1D19 | TBC1 domain family member 19 | XR_001741277.1 | 76.1% | (many diffs) | |
| 6 | human | 55296 | TBC1D19 | TBC1 domain family member 19 | XR_925333.2 | 71.5% | (many diffs) | |
| 7 | human | 55296 | TBC1D19 | TBC1 domain family member 19 | XM_011513852.2 | 69.1% | 67.9% | (many diffs) |
| 8 | human | 55296 | TBC1D19 | TBC1 domain family member 19 | XM_017008364.1 | 62.8% | 60.4% | (many diffs) |
| 9 | human | 55296 | TBC1D19 | TBC1 domain family member 19 | XR_001741279.1 | 58.1% | (many diffs) | |
| 10 | human | 55296 | TBC1D19 | TBC1 domain family member 19 | XR_001741276.1 | 57.9% | (many diffs) | |
| 11 | human | 55296 | TBC1D19 | TBC1 domain family member 19 | XR_001741278.1 | 56.6% | (many diffs) | |
| 12 | human | 55296 | TBC1D19 | TBC1 domain family member 19 | XR_925337.2 | 25.5% | (many diffs) | |
| 13 | human | 55296 | TBC1D19 | TBC1 domain family member 19 | XR_925336.2 | 23.4% | (many diffs) | |
| 14 | mouse | 67249 | Tbc1d19 | TBC1 domain family, member 19 | NM_144517.4 | 91.7% | 97.3% | (many diffs) |
| 15 | mouse | 67249 | Tbc1d19 | TBC1 domain family, member 19 | XM_006504065.2 | 75.5% | 80.7% | (many diffs) |
| 16 | mouse | 67249 | Tbc1d19 | TBC1 domain family, member 19 | XR_001784736.1 | 63.7% | (many diffs) | |
| 17 | mouse | 67249 | Tbc1d19 | TBC1 domain family, member 19 | XM_006504067.2 | 62.3% | 65.9% | (many diffs) |
| 18 | mouse | 67249 | Tbc1d19 | TBC1 domain family, member 19 | XM_017321077.1 | 62.3% | 65.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1644
- ORF length:
- 1578
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT GCAGGAGGAG TCGGACCTCT CTCTCATTAT TGCCCAGATA GTCCAAAAGC 121 TCAAGGGCTC CAATTTGTAC TCTCAGCTGG AACGGCAGGC CTGGGCCAGT CTTCAGAGAC 181 CTGAGATTAA ACTTGAATCA CTGAAAGAAG ATATTAAGGA ATTCTTTAAA ATATCAGGTT 241 GGGAGAAGAA ACTTCAGAAT GCTGTTTATA GTGAACTGAG TGTGTTTCCT TTACCTAGTC 301 ATCCTGCTGC ACCTCCTGAA CATCTTAAAG AACCTTTGGT ATACATGAGG AAAGCACAGG 361 GAAGTTGGGA AAAAAGAATT TTGAAGAGTT TAAATAGTAT GTGCACTGAA CTGAGTATCC 421 CACTGGCACG AAAGAGGCCA GTTGGAGAAC AGAAAGAACT TCTTAATAAA TGGAATGAAA 481 TGGGAACTGA TGAACCAGAT TTAAGCCTTT TCAGACCTGT TTATGCACCT AAGGATTTTC 541 TTGAGGTATT AATTAATCTT CGCAACCCAA ATTATGAAAA CGGTGATTCT CTTAGTTTCA 601 GGACTCATTT GGGTTTAATT CAAGTTCCAC TGAAAGTAAA AGACATCCCT GAATTGAAAG 661 AATGCTTTGT GGAACTTGGC TTAAATATAG GACAACTGGG TATAGATGAT TCTACACAAG 721 TGCCTCCTGA ACTTTTTGAA AATGAGCATG TACGTATTGG GCAAAAAGTT CTAGCAGAAC 781 AAGATAGTGC TGCTGCTCAA CAGTACATCA GACAAGGAAG TCCCACGGCA CTGAGAGCTG 841 AATTGTGGGC TCTCATTTTG AATATTTCCA GCCAACCTGA GGATGTCTTG TATTATGAGC 901 AGCTTAAGAC CAATGTGATA CAACATGACC TTTTGGTGGA CAGTCTAATC TATAAAGATG 961 TGAAGTTGAC AGCAAGCAAT GATGATTATT ATTTTGTATT TGAAGATTAT TTATATCAGG 1021 TATTACTTTG TTTTTCCCGG GATACATCTG TGTTGAGTCA CTTTGCATTC AACAGTGCCT 1081 CGCCACCAAA ATCATACATA AGAGGAAAAC TAGGACTGGA AGAATATGCT GTCTTTTACC 1141 CACCAAATGG TGTTATCCCT TTTCATGGAT TTTCAATGTA TGTTGCACCA CTTTGTTTTC 1201 TATACCATGA ACCTTCCAAA TTGTATCAGA TATTCCGTGA GATGTATGTG CGTTTTTTCT 1261 TCAGACTCCA TTCCATCTCT TCTCATCCTT CTGGTATTGT GTCACTCTGT CTGCTGTTTG 1321 AAACTCTTCT TCAAACTTAT CTTCCCCAAC TCTTTTATCA TCTACGAGAA ATTGGGGCTC 1381 AACCACTTCG CATATCATTT AAGTGGATGG TTCGAGCTTT CTCTGGATAC TTAGCTACAG 1441 ATCAGCTCTT GCTTTTATGG GATAGAATCC TAGGATACAA CTCTCTGGAA ATTCTTGCTG 1501 TGCTGGCAGC TGCCGTGTTT GCTTTCCGAG CAGTGAACCT GATGGAGGTG ACATCACTGG 1561 CTGCAGCTGA AGCAGTTCTT GCTGACCTTT CTACTTTAAA AGTTATGCCT CTTCTTCAGA 1621 TTTTTCTGTT TGCTACTGTC ACCTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa 1681 agcattgctt atcaatttgt tgcaacgaac