Construct: ORF ccsbBroadEn_03646
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009443.1_s300c1, BRDN0000397233
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- COA1 (55744)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_001321197.1 | 100% | 100% | |
| 2 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_001321198.1 | 100% | 100% | |
| 3 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_001321199.1 | 100% | 100% | |
| 4 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_001321200.1 | 100% | 100% | |
| 5 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_001350924.1 | 100% | 100% | |
| 6 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_001350925.1 | 100% | 100% | |
| 7 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_001350926.1 | 100% | 100% | |
| 8 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_001350927.1 | 100% | 100% | |
| 9 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_001371307.1 | 100% | 100% | |
| 10 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_001371308.1 | 100% | 100% | |
| 11 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_001371309.1 | 100% | 100% | |
| 12 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_001371310.1 | 100% | 100% | |
| 13 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_001371311.1 | 100% | 100% | |
| 14 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_001371312.1 | 100% | 100% | |
| 15 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_001371313.1 | 100% | 100% | |
| 16 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_001371314.1 | 100% | 100% | |
| 17 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_001371315.1 | 100% | 100% | |
| 18 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_001371316.1 | 100% | 100% | |
| 19 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_018224.3 | 100% | 100% | |
| 20 | human | 55744 | COA1 | cytochrome c oxidase assemb... | XM_005249807.5 | 100% | 100% | |
| 21 | human | 55744 | COA1 | cytochrome c oxidase assemb... | XM_006715752.2 | 100% | 100% | |
| 22 | human | 55744 | COA1 | cytochrome c oxidase assemb... | XM_017012414.2 | 100% | 100% | |
| 23 | human | 55744 | COA1 | cytochrome c oxidase assemb... | XM_017012415.1 | 100% | 100% | |
| 24 | human | 55744 | COA1 | cytochrome c oxidase assemb... | XM_017012416.2 | 100% | 100% | |
| 25 | human | 55744 | COA1 | cytochrome c oxidase assemb... | XM_017012417.2 | 100% | 100% | |
| 26 | human | 55744 | COA1 | cytochrome c oxidase assemb... | XM_017012418.2 | 100% | 100% | |
| 27 | human | 55744 | COA1 | cytochrome c oxidase assemb... | XM_017012421.2 | 100% | 100% | |
| 28 | human | 55744 | COA1 | cytochrome c oxidase assemb... | XM_017012422.1 | 100% | 100% | |
| 29 | human | 55744 | COA1 | cytochrome c oxidase assemb... | XM_017012424.1 | 100% | 100% | |
| 30 | human | 55744 | COA1 | cytochrome c oxidase assemb... | XM_017012425.1 | 100% | 100% | |
| 31 | human | 55744 | COA1 | cytochrome c oxidase assemb... | XM_017012426.1 | 100% | 100% | |
| 32 | human | 55744 | COA1 | cytochrome c oxidase assemb... | XM_017012427.1 | 100% | 100% | |
| 33 | human | 55744 | COA1 | cytochrome c oxidase assemb... | XM_017012428.1 | 100% | 100% | |
| 34 | human | 55744 | COA1 | cytochrome c oxidase assemb... | XM_017012429.1 | 100% | 100% | |
| 35 | human | 55744 | COA1 | cytochrome c oxidase assemb... | XM_017012430.1 | 100% | 100% | |
| 36 | human | 55744 | COA1 | cytochrome c oxidase assemb... | XM_017012431.1 | 100% | 100% | |
| 37 | human | 55744 | COA1 | cytochrome c oxidase assemb... | XM_017012432.1 | 100% | 100% | |
| 38 | human | 55744 | COA1 | cytochrome c oxidase assemb... | XM_024446827.1 | 100% | 100% | |
| 39 | human | 55744 | COA1 | cytochrome c oxidase assemb... | XM_024446828.1 | 100% | 100% | |
| 40 | human | 55744 | COA1 | cytochrome c oxidase assemb... | XM_024446829.1 | 100% | 100% | |
| 41 | human | 55744 | COA1 | cytochrome c oxidase assemb... | XM_024446830.1 | 100% | 100% | |
| 42 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_001350928.1 | 95.8% | 75.9% | 0_1insATGATGTGGCAAAAGT;99_100insAG |
| 43 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_001371317.1 | 95.8% | 75.9% | 0_1insATGATGTGGCAAAAGT;99_100insAG |
| 44 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_001371318.1 | 95.4% | 75.9% | 0_1insATGATGTGGCAAAAGT;98_101delAAGT |
| 45 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_001321201.1 | 91.7% | 91.7% | 0_1ins36 |
| 46 | human | 55744 | COA1 | cytochrome c oxidase assemb... | XM_017012413.1 | 79.4% | 73.2% | (many diffs) |
| 47 | human | 55744 | COA1 | cytochrome c oxidase assemb... | XM_017012420.1 | 79.4% | 73.2% | (many diffs) |
| 48 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NR_163915.1 | 48.4% | 1_133del;398_402delGTAAT;577_904del | |
| 49 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NR_163919.1 | 43.5% | 1_234del;499_503delGTAAT;678_1005del | |
| 50 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_001321202.1 | 37.7% | 25.8% | (many diffs) |
| 51 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_001321203.1 | 37.7% | 25.8% | (many diffs) |
| 52 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_001321204.1 | 37.7% | 25.8% | (many diffs) |
| 53 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NM_001321205.1 | 37.7% | 25.8% | (many diffs) |
| 54 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NR_146945.2 | 25% | 1_133del;572_1746del | |
| 55 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NR_146942.2 | 24.1% | 1_198del;637_1811del | |
| 56 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NR_135582.2 | 23.1% | 1_133del;572_1892del | |
| 57 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NR_146943.2 | 22.7% | 1_133del;146_147insAGTATGC;565_1885del | |
| 58 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NR_146944.2 | 22.3% | 1_198del;637_1957del | |
| 59 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NR_135581.2 | 21.9% | 1_234del;673_1993del | |
| 60 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NR_135580.2 | 16.8% | 1_234del;673_2592del | |
| 61 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NR_047701.1 | 14.3% | 1_216del;655_3047del | |
| 62 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NR_135583.2 | 10.2% | 1_133del;572_4289del | |
| 63 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NR_163914.1 | 10% | 1_198del;637_4354del | |
| 64 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NR_146941.2 | 9.9% | 1_248del;687_4404del | |
| 65 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NR_163918.1 | 9.7% | 1_183del;622_4486del | |
| 66 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NR_163917.1 | 9.6% | 1_198del;637_4545del | |
| 67 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NR_163916.1 | 9.4% | 1_198del;637_4647del | |
| 68 | human | 55744 | COA1 | cytochrome c oxidase assemb... | NR_146940.2 | 6.7% | 1_133del;248_249ins149;423_4140del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 504
- ORF length:
- 438
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaNTTTG TACAAAAAAG 61 TTGGCATGAT GTGGCAAAAG TATGCAGGAA GCAGGCGGTC AATGCCTCTG GGAGCAAGGA 121 TCCTTTTCCA CGGTGTGTTC TATGCCGGGG GCTTTGCCAT TGTGTATTAC CTCATTCAAA 181 AGTTTCATTC CAGGGCTTTA TATTACAAGT TGGCAGTGGA GCAGCTGCAG AGCCATCCCG 241 AGGCACAGGA AGCTCTGGGC CCTCCTCTCA ACATCCATTA TCTCAAGCTC ATCGACAGGG 301 AAAACTTCGT GGACATTGTT GATGCCAAGT TGAAGATTCC TGTCTCTGGA TCCAAATCAG 361 AGGGCCTTCT CTACGTCCAC TCATCCAGAG GTGGCCCCTT TCAGAGGTGG CACCTTGACG 421 AGGTCTTTTT AGAGCTCAAG GATGGTCAGC AGATTCCTGT GTTCAAGCTC AGTGGGGAAA 481 ACGGTGATGA AGTGAAAAAG GAGTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa 541 agcattgctt atcaatttgt tgcaacgaac