Construct: ORF ccsbBroadEn_03646

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009443.1_s300c1, BRDN0000397233
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
COA1 (55744)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55744 COA1 cytochrome c oxidase assemb... NM_001321197.1 100% 100%
2 human 55744 COA1 cytochrome c oxidase assemb... NM_001321198.1 100% 100%
3 human 55744 COA1 cytochrome c oxidase assemb... NM_001321199.1 100% 100%
4 human 55744 COA1 cytochrome c oxidase assemb... NM_001321200.1 100% 100%
5 human 55744 COA1 cytochrome c oxidase assemb... NM_001350924.1 100% 100%
6 human 55744 COA1 cytochrome c oxidase assemb... NM_001350925.1 100% 100%
7 human 55744 COA1 cytochrome c oxidase assemb... NM_001350926.1 100% 100%
8 human 55744 COA1 cytochrome c oxidase assemb... NM_001350927.1 100% 100%
9 human 55744 COA1 cytochrome c oxidase assemb... NM_001371307.1 100% 100%
10 human 55744 COA1 cytochrome c oxidase assemb... NM_001371308.1 100% 100%
11 human 55744 COA1 cytochrome c oxidase assemb... NM_001371309.1 100% 100%
12 human 55744 COA1 cytochrome c oxidase assemb... NM_001371310.1 100% 100%
13 human 55744 COA1 cytochrome c oxidase assemb... NM_001371311.1 100% 100%
14 human 55744 COA1 cytochrome c oxidase assemb... NM_001371312.1 100% 100%
15 human 55744 COA1 cytochrome c oxidase assemb... NM_001371313.1 100% 100%
16 human 55744 COA1 cytochrome c oxidase assemb... NM_001371314.1 100% 100%
17 human 55744 COA1 cytochrome c oxidase assemb... NM_001371315.1 100% 100%
18 human 55744 COA1 cytochrome c oxidase assemb... NM_001371316.1 100% 100%
19 human 55744 COA1 cytochrome c oxidase assemb... NM_018224.3 100% 100%
20 human 55744 COA1 cytochrome c oxidase assemb... XM_005249807.5 100% 100%
21 human 55744 COA1 cytochrome c oxidase assemb... XM_006715752.2 100% 100%
22 human 55744 COA1 cytochrome c oxidase assemb... XM_017012414.2 100% 100%
23 human 55744 COA1 cytochrome c oxidase assemb... XM_017012415.1 100% 100%
24 human 55744 COA1 cytochrome c oxidase assemb... XM_017012416.2 100% 100%
25 human 55744 COA1 cytochrome c oxidase assemb... XM_017012417.2 100% 100%
26 human 55744 COA1 cytochrome c oxidase assemb... XM_017012418.2 100% 100%
27 human 55744 COA1 cytochrome c oxidase assemb... XM_017012421.2 100% 100%
28 human 55744 COA1 cytochrome c oxidase assemb... XM_017012422.1 100% 100%
29 human 55744 COA1 cytochrome c oxidase assemb... XM_017012424.1 100% 100%
30 human 55744 COA1 cytochrome c oxidase assemb... XM_017012425.1 100% 100%
31 human 55744 COA1 cytochrome c oxidase assemb... XM_017012426.1 100% 100%
32 human 55744 COA1 cytochrome c oxidase assemb... XM_017012427.1 100% 100%
33 human 55744 COA1 cytochrome c oxidase assemb... XM_017012428.1 100% 100%
34 human 55744 COA1 cytochrome c oxidase assemb... XM_017012429.1 100% 100%
35 human 55744 COA1 cytochrome c oxidase assemb... XM_017012430.1 100% 100%
36 human 55744 COA1 cytochrome c oxidase assemb... XM_017012431.1 100% 100%
37 human 55744 COA1 cytochrome c oxidase assemb... XM_017012432.1 100% 100%
38 human 55744 COA1 cytochrome c oxidase assemb... XM_024446827.1 100% 100%
39 human 55744 COA1 cytochrome c oxidase assemb... XM_024446828.1 100% 100%
40 human 55744 COA1 cytochrome c oxidase assemb... XM_024446829.1 100% 100%
41 human 55744 COA1 cytochrome c oxidase assemb... XM_024446830.1 100% 100%
42 human 55744 COA1 cytochrome c oxidase assemb... NM_001350928.1 95.8% 75.9% 0_1insATGATGTGGCAAAAGT;99_100insAG
43 human 55744 COA1 cytochrome c oxidase assemb... NM_001371317.1 95.8% 75.9% 0_1insATGATGTGGCAAAAGT;99_100insAG
44 human 55744 COA1 cytochrome c oxidase assemb... NM_001371318.1 95.4% 75.9% 0_1insATGATGTGGCAAAAGT;98_101delAAGT
45 human 55744 COA1 cytochrome c oxidase assemb... NM_001321201.1 91.7% 91.7% 0_1ins36
46 human 55744 COA1 cytochrome c oxidase assemb... XM_017012413.1 79.4% 73.2% (many diffs)
47 human 55744 COA1 cytochrome c oxidase assemb... XM_017012420.1 79.4% 73.2% (many diffs)
48 human 55744 COA1 cytochrome c oxidase assemb... NR_163915.1 48.4% 1_133del;398_402delGTAAT;577_904del
49 human 55744 COA1 cytochrome c oxidase assemb... NR_163919.1 43.5% 1_234del;499_503delGTAAT;678_1005del
50 human 55744 COA1 cytochrome c oxidase assemb... NM_001321202.1 37.7% 25.8% (many diffs)
51 human 55744 COA1 cytochrome c oxidase assemb... NM_001321203.1 37.7% 25.8% (many diffs)
52 human 55744 COA1 cytochrome c oxidase assemb... NM_001321204.1 37.7% 25.8% (many diffs)
53 human 55744 COA1 cytochrome c oxidase assemb... NM_001321205.1 37.7% 25.8% (many diffs)
54 human 55744 COA1 cytochrome c oxidase assemb... NR_146945.2 25% 1_133del;572_1746del
55 human 55744 COA1 cytochrome c oxidase assemb... NR_146942.2 24.1% 1_198del;637_1811del
56 human 55744 COA1 cytochrome c oxidase assemb... NR_135582.2 23.1% 1_133del;572_1892del
57 human 55744 COA1 cytochrome c oxidase assemb... NR_146943.2 22.7% 1_133del;146_147insAGTATGC;565_1885del
58 human 55744 COA1 cytochrome c oxidase assemb... NR_146944.2 22.3% 1_198del;637_1957del
59 human 55744 COA1 cytochrome c oxidase assemb... NR_135581.2 21.9% 1_234del;673_1993del
60 human 55744 COA1 cytochrome c oxidase assemb... NR_135580.2 16.8% 1_234del;673_2592del
61 human 55744 COA1 cytochrome c oxidase assemb... NR_047701.1 14.3% 1_216del;655_3047del
62 human 55744 COA1 cytochrome c oxidase assemb... NR_135583.2 10.2% 1_133del;572_4289del
63 human 55744 COA1 cytochrome c oxidase assemb... NR_163914.1 10% 1_198del;637_4354del
64 human 55744 COA1 cytochrome c oxidase assemb... NR_146941.2 9.9% 1_248del;687_4404del
65 human 55744 COA1 cytochrome c oxidase assemb... NR_163918.1 9.7% 1_183del;622_4486del
66 human 55744 COA1 cytochrome c oxidase assemb... NR_163917.1 9.6% 1_198del;637_4545del
67 human 55744 COA1 cytochrome c oxidase assemb... NR_163916.1 9.4% 1_198del;637_4647del
68 human 55744 COA1 cytochrome c oxidase assemb... NR_146940.2 6.7% 1_133del;248_249ins149;423_4140del
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
504
ORF length:
438
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaNTTTG TACAAAAAAG
61TTGGCATGAT GTGGCAAAAG TATGCAGGAA GCAGGCGGTC AATGCCTCTG GGAGCAAGGA
121TCCTTTTCCA CGGTGTGTTC TATGCCGGGG GCTTTGCCAT TGTGTATTAC CTCATTCAAA
181AGTTTCATTC CAGGGCTTTA TATTACAAGT TGGCAGTGGA GCAGCTGCAG AGCCATCCCG
241AGGCACAGGA AGCTCTGGGC CCTCCTCTCA ACATCCATTA TCTCAAGCTC ATCGACAGGG
301AAAACTTCGT GGACATTGTT GATGCCAAGT TGAAGATTCC TGTCTCTGGA TCCAAATCAG
361AGGGCCTTCT CTACGTCCAC TCATCCAGAG GTGGCCCCTT TCAGAGGTGG CACCTTGACG
421AGGTCTTTTT AGAGCTCAAG GATGGTCAGC AGATTCCTGT GTTCAAGCTC AGTGGGGAAA
481ACGGTGATGA AGTGAAAAAG GAGTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa
541agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)