Construct: ORF ccsbBroadEn_03862
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007062.1_s300c1, BRDN0000384979
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- INIP (58493)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 58493 | INIP | INTS3 and NABP interacting ... | NM_021218.3 | 100% | 100% | |
| 2 | human | 58493 | INIP | INTS3 and NABP interacting ... | NM_001329585.2 | 95.5% | 92.3% | (many diffs) |
| 3 | human | 58493 | INIP | INTS3 and NABP interacting ... | NM_001329588.2 | 71.1% | 71.1% | 0_1ins90 |
| 4 | human | 58493 | INIP | INTS3 and NABP interacting ... | NM_001329589.2 | 71.1% | 71.1% | 0_1ins90 |
| 5 | human | 58493 | INIP | INTS3 and NABP interacting ... | NM_001329590.2 | 71.1% | 71.1% | 0_1ins90 |
| 6 | human | 58493 | INIP | INTS3 and NABP interacting ... | NM_001329586.2 | 63.8% | 42.9% | 126_127ins91;222_255del |
| 7 | human | 58493 | INIP | INTS3 and NABP interacting ... | NM_001329587.2 | 60.4% | 19.8% | 23_24ins103;210_243del |
| 8 | human | 58493 | INIP | INTS3 and NABP interacting ... | NR_138056.2 | 5.2% | (many diffs) | |
| 9 | human | 58493 | INIP | INTS3 and NABP interacting ... | NR_138055.2 | 5.2% | (many diffs) | |
| 10 | mouse | 66209 | Inip | INTS3 and NABP interacting ... | NM_001013577.1 | 90.3% | 96.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 378
- ORF length:
- 312
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC AGCAAACTCT TCAGGACAAG GTTTTCAAAA CAAAAATAGA GTTGCAATCT 121 TGGCAGAACT GGACAAAGAG AAAAGAAAAC TACTTATGCA GAACCAGTCT TCAACAAATC 181 ATCCTGGAGC TAGCATTGCA CTCTCGAGAC CCTCTCTTAA TAAGGACTTC CGGGATCACG 241 CTGAGCAGCA GCATATTGCA GCCCAACAGA AGGCAGCTTT GCAGCATGCT CATGCACATT 301 CATCTGGATA CTTCATCACT CAAGACTCTG CATTTGGGAA CCTTATTCTT CCTGTTTTAC 361 CTCGCCTTGA CCCAGAATGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 421 gcttatcaat ttgttgcaac gaac