Construct: ORF ccsbBroadEn_03908
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004399.1_s300c1, BRDN0000388438
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- XPNPEP3 (63929)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 63929 | XPNPEP3 | X-prolyl aminopeptidase 3 | NM_022098.4 | 100% | 100% | |
| 2 | mouse | 321003 | Xpnpep3 | X-prolyl aminopeptidase 3, ... | NM_001347075.1 | 87.1% | 90.5% | (many diffs) |
| 3 | mouse | 321003 | Xpnpep3 | X-prolyl aminopeptidase 3, ... | XM_006521087.2 | 73.6% | 77.7% | (many diffs) |
| 4 | mouse | 321003 | Xpnpep3 | X-prolyl aminopeptidase 3, ... | NM_177310.2 | 66.5% | 63.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1587
- ORF length:
- 1521
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTTGCATGCC TTGGCTGCTC TCAGCCCCCA AGCTGGTTCC CGCTGTAGCA AACGTCCGCG 121 GCCTCTCAGG ATGTATGTTG TGTTCACAGC GAAGGTACTC CCTTCAGCCT GTCCCAGAAA 181 GGAGGATTCC AAACCGATAC TTAGGCCAGC CCAGCCCCTT TACACACCCA CACCTCCTCA 241 GACCAGGGGA GGTAACTCCA GGACTATCTC AGGTGGAATA TGCACTTCGC AGACACAAAC 301 TAATGTCTCT GATCCAGAAG GAAGCTCAAG GGCAGAGTGG GACAGACCAG ACAGTGGTTG 361 TGCTCTCCAA CCCTACATAC TACATGAGCA ACGATATTCC CTATACTTTC CACCAAGACA 421 ACAATTTCCT GTACCTATGT GGATTCCAAG AGCCTGATAG CATTCTTGTC CTTCAGAGCC 481 TCCCTGGCAA ACAATTACCA TCACACAAAG CCATACTTTT TGTGCCTCGG CGAGATCCCA 541 GTCGAGAACT TTGGGATGGT CCGCGATCTG GCACTGATGG AGCAATAGCT CTAACTGGAG 601 TAGACGAAGC CTATACGCTA GAAGAATTTC AACATCTTCT ACCAAAAATG AAAGCTGAGA 661 CGAACATGGT TTGGTATGAC TGGATGAGGC CCTCACATGC ACAGCTTCAC TCTGACTATA 721 TGCAGCCCCT GACTGAGGCC AAAGCCAAGA GCAAGAACAA GGTTCGGGGT GTTCAGCAGC 781 TGATACAGCG CCTCCGGCTG ATCAAGTCTC CTGCAGAAAT TGAACGAATG CAGATTGCTG 841 GGAAGCTGAC ATCACAGGCT TTCATAGAAA CCATGTTCAC CAGTAAAGCC CCTGTGGAAG 901 AAGCCTTTCT TTATGCTAAG TTTGAATTTG AATGCCGGGC TCGTGGCGCA GACATTTTAG 961 CCTATCCACC TGTGGTGGCT GGTGGTAATC GGTCAAACAC TTTGCACTAT GTGAAAAATA 1021 ATCAACTCAT CAAGGATGGG GAAATGGTGC TTCTGGATGG AGGTTGTGAG TCTTCCTGCT 1081 ATGTGAGTGA CATCACACGT ACGTGGCCAG TCAATGGCAG GTTCACCGCA CCTCAGGCAG 1141 AACTCTATGA AGCCGTTCTA GAGATCCAAA GAGATTGTTT GGCCCTCTGC TTCCCTGGGA 1201 CAAGCTTGGA GAACATCTAC AGCATGATGC TGACCCTGAT AGGACAGAAG CTTAAAGACT 1261 TGGGGATCAT GAAGAACATT AAGGAAAATA ATGCCTTCAA GGCTGCTCGA AAATACTGTC 1321 CTCATCATGT TGGCCACTAC CTCGGGATGG ATGTCCATGA CACTCCAGAC ATGCCCCGTT 1381 CCCTCCCTCT GCAGCCTGGG ATGGTAATCA CAATTGAGCC CGGCATTTAT ATTCCAGAGG 1441 ATGACAAAGA TGCCCCAGAG AAGTTTCGGG GTCTTGGTGT ACGAATTGAG GATGATGTAG 1501 TGGTGACTCA GGACTCACCT CTCATCCTTT CTGCAGACTG TCCCAAAGAG ATGAATGACA 1561 TTGAACAGAT ATGCAGCCAG GCTTCTTGCC CAACTTTCTT GTACAAAGTt ggcattataa 1621 gaaagcattg cttatcaatt tgttgcaacg aac