Construct: ORF ccsbBroadEn_03919

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002787.1_s300c1, BRDN0000386766
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SNX16 (64089)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64089 SNX16 sorting nexin 16 NM_022133.3 100% 100%
2 human 64089 SNX16 sorting nexin 16 NM_152836.3 100% 100%
3 human 64089 SNX16 sorting nexin 16 NM_001348189.2 91.5% 91.5% 147_148ins87
4 human 64089 SNX16 sorting nexin 16 NM_152837.3 91.5% 91.5% 375_376ins87
5 human 64089 SNX16 sorting nexin 16 XM_005251282.4 91.5% 91.5% 147_148ins87
6 human 64089 SNX16 sorting nexin 16 XM_011517574.2 54.3% 54.3% 0_1ins471
7 human 64089 SNX16 sorting nexin 16 NR_145472.2 30.9% 1_160del;770_771ins70;1123_3039del
8 human 64089 SNX16 sorting nexin 16 NR_145474.2 28.6% 1_406del;1016_1017ins70;1369_3285del
9 human 64089 SNX16 sorting nexin 16 NR_145473.2 28.1% (many diffs)
10 human 64089 SNX16 sorting nexin 16 NR_145475.2 26% (many diffs)
11 human 64089 SNX16 sorting nexin 16 XR_002956641.1 25.1% (many diffs)
12 mouse 74718 Snx16 sorting nexin 16 NM_029068.4 85.6% 84% (many diffs)
13 mouse 74718 Snx16 sorting nexin 16 NM_001127191.2 75.7% 75.8% (many diffs)
14 mouse 74718 Snx16 sorting nexin 16 XM_011248147.2 52.5% 54% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1098
ORF length:
1032
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC AACTCCTTAT GTCCCAGTTC CTATGCCCAT AGGAAACTCT GCTTCCAGTT
121TTACAACAAA CAGAAATCAA AGAAGTTCTT CTTTTGGCAG TGTCTCAACA AGCTCAAATT
181CTTCTAAGGG CCAGTTAGAA GACTCAAATA TGGGTAATTT TAAACAGACA AGTGTTCCTG
241ATCAAATGGA TAATACTTCA TCTGTCTGTA GCAGTCCCCT CATTAGGACT AAATTTACAG
301GTACAGCTTC TTCCATTGAG TATTCTACTA GACCAAGAGA CACTGAAGAA CAAAATCCGG
361AAACAGTGAA TTGGGAAGAT AGACCATCTA CACCTACTAT ACTGGGTTAT GAAGTGATGG
421AAGAAAGAGC TAAATTTACT GTATATAAAA TACTAGTAAA GAAAACCCCA GAAGAAAGCT
481GGGTAGTTTT CAGAAGATAC ACTGACTTCT CTAGGCTTAA TGACAAATTA AAAGAGATGT
541TTCCAGGTTT TCGACTAGCA CTTCCTCCAA AACGCTGGTT TAAAGATAAT TACAATGCTG
601ACTTTTTAGA AGACAGACAA TTAGGATTAC AAGCGTTTCT TCAAAATTTA GTAGCTCACA
661AGGACATTGC TAACTGCCTT GCAGTGAGAG AATTTCTTTG TTTGGATGAT CCACCGGGTC
721CATTTGATAG CCTAGAAGAA AGCAGGGCAT TCTGTGAAAC TTTAGAAGAG ACAAACTACC
781GCTTACAGAA AGAACTACTT GAAAAACAAA AGGAGATGGA ATCACTAAAG AAACTGCTCA
841GTGAGAAGCA ACTTCATATA GACACTTTAG AGAACAGAAT CAGAACATTG TCTTTAGAAC
901CTGAAGAATC ACTGGATGTG TCAGAAACAG AAGGTGAACA GATCCTAAAG GTGGAGTCCT
961CTGCACTTGA GGTTGATCAA GATGTCCTGG ATGAAGAATC TAGAGCTGAT AATAAACCAT
1021GCTTAAGTTT TAGTGAACCT GAAAATGCTG TATCAGAGAT AGAAGTAGCA GAAGTGGCAT
1081ATGATGCTGA AGAAGACTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
1141gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)

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