Construct: ORF ccsbBroadEn_03919
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002787.1_s300c1, BRDN0000386766
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SNX16 (64089)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64089 | SNX16 | sorting nexin 16 | NM_022133.3 | 100% | 100% | |
| 2 | human | 64089 | SNX16 | sorting nexin 16 | NM_152836.3 | 100% | 100% | |
| 3 | human | 64089 | SNX16 | sorting nexin 16 | NM_001348189.2 | 91.5% | 91.5% | 147_148ins87 |
| 4 | human | 64089 | SNX16 | sorting nexin 16 | NM_152837.3 | 91.5% | 91.5% | 375_376ins87 |
| 5 | human | 64089 | SNX16 | sorting nexin 16 | XM_005251282.4 | 91.5% | 91.5% | 147_148ins87 |
| 6 | human | 64089 | SNX16 | sorting nexin 16 | XM_011517574.2 | 54.3% | 54.3% | 0_1ins471 |
| 7 | human | 64089 | SNX16 | sorting nexin 16 | NR_145472.2 | 30.9% | 1_160del;770_771ins70;1123_3039del | |
| 8 | human | 64089 | SNX16 | sorting nexin 16 | NR_145474.2 | 28.6% | 1_406del;1016_1017ins70;1369_3285del | |
| 9 | human | 64089 | SNX16 | sorting nexin 16 | NR_145473.2 | 28.1% | (many diffs) | |
| 10 | human | 64089 | SNX16 | sorting nexin 16 | NR_145475.2 | 26% | (many diffs) | |
| 11 | human | 64089 | SNX16 | sorting nexin 16 | XR_002956641.1 | 25.1% | (many diffs) | |
| 12 | mouse | 74718 | Snx16 | sorting nexin 16 | NM_029068.4 | 85.6% | 84% | (many diffs) |
| 13 | mouse | 74718 | Snx16 | sorting nexin 16 | NM_001127191.2 | 75.7% | 75.8% | (many diffs) |
| 14 | mouse | 74718 | Snx16 | sorting nexin 16 | XM_011248147.2 | 52.5% | 54% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1098
- ORF length:
- 1032
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC AACTCCTTAT GTCCCAGTTC CTATGCCCAT AGGAAACTCT GCTTCCAGTT 121 TTACAACAAA CAGAAATCAA AGAAGTTCTT CTTTTGGCAG TGTCTCAACA AGCTCAAATT 181 CTTCTAAGGG CCAGTTAGAA GACTCAAATA TGGGTAATTT TAAACAGACA AGTGTTCCTG 241 ATCAAATGGA TAATACTTCA TCTGTCTGTA GCAGTCCCCT CATTAGGACT AAATTTACAG 301 GTACAGCTTC TTCCATTGAG TATTCTACTA GACCAAGAGA CACTGAAGAA CAAAATCCGG 361 AAACAGTGAA TTGGGAAGAT AGACCATCTA CACCTACTAT ACTGGGTTAT GAAGTGATGG 421 AAGAAAGAGC TAAATTTACT GTATATAAAA TACTAGTAAA GAAAACCCCA GAAGAAAGCT 481 GGGTAGTTTT CAGAAGATAC ACTGACTTCT CTAGGCTTAA TGACAAATTA AAAGAGATGT 541 TTCCAGGTTT TCGACTAGCA CTTCCTCCAA AACGCTGGTT TAAAGATAAT TACAATGCTG 601 ACTTTTTAGA AGACAGACAA TTAGGATTAC AAGCGTTTCT TCAAAATTTA GTAGCTCACA 661 AGGACATTGC TAACTGCCTT GCAGTGAGAG AATTTCTTTG TTTGGATGAT CCACCGGGTC 721 CATTTGATAG CCTAGAAGAA AGCAGGGCAT TCTGTGAAAC TTTAGAAGAG ACAAACTACC 781 GCTTACAGAA AGAACTACTT GAAAAACAAA AGGAGATGGA ATCACTAAAG AAACTGCTCA 841 GTGAGAAGCA ACTTCATATA GACACTTTAG AGAACAGAAT CAGAACATTG TCTTTAGAAC 901 CTGAAGAATC ACTGGATGTG TCAGAAACAG AAGGTGAACA GATCCTAAAG GTGGAGTCCT 961 CTGCACTTGA GGTTGATCAA GATGTCCTGG ATGAAGAATC TAGAGCTGAT AATAAACCAT 1021 GCTTAAGTTT TAGTGAACCT GAAAATGCTG TATCAGAGAT AGAAGTAGCA GAAGTGGCAT 1081 ATGATGCTGA AGAAGACTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 1141 gcttatcaat ttgttgcaac gaac