Construct: ORF ccsbBroadEn_03954

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000996.1_s300c1, BRDN0000387132
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CPEB1 (64506)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64506 CPEB1 cytoplasmic polyadenylation... NM_030594.5 100% 100%
2 human 64506 CPEB1 cytoplasmic polyadenylation... NM_001365243.1 99.1% 99.1% 1060_1074del
3 human 64506 CPEB1 cytoplasmic polyadenylation... NM_001365240.1 95.1% 94.8% (many diffs)
4 human 64506 CPEB1 cytoplasmic polyadenylation... NM_001365241.1 95.1% 94.8% (many diffs)
5 human 64506 CPEB1 cytoplasmic polyadenylation... NM_001365242.1 95.1% 94.8% (many diffs)
6 human 64506 CPEB1 cytoplasmic polyadenylation... NM_001079534.2 86.6% 86.6% 0_1ins225
7 human 64506 CPEB1 cytoplasmic polyadenylation... NM_001079535.2 86.6% 86.6% 0_1ins225
8 human 64506 CPEB1 cytoplasmic polyadenylation... NM_001288819.1 86.6% 86.6% 0_1ins225
9 human 64506 CPEB1 cytoplasmic polyadenylation... NM_001365244.1 86.6% 86.6% 0_1ins225
10 human 64506 CPEB1 cytoplasmic polyadenylation... NM_001365245.1 86.6% 86.6% 0_1ins225
11 human 64506 CPEB1 cytoplasmic polyadenylation... NM_001365246.1 86.6% 86.6% 0_1ins225
12 human 64506 CPEB1 cytoplasmic polyadenylation... NM_001365247.1 86.6% 86.6% 0_1ins225
13 human 64506 CPEB1 cytoplasmic polyadenylation... NM_001365248.1 86.6% 86.6% 0_1ins225
14 human 64506 CPEB1 cytoplasmic polyadenylation... NM_001365249.1 86.6% 86.6% 0_1ins225
15 human 64506 CPEB1 cytoplasmic polyadenylation... NM_001079533.2 85.8% 85.8% 0_1ins225;835_849del
16 human 64506 CPEB1 cytoplasmic polyadenylation... NM_001365250.1 85.8% 85.8% 0_1ins225;835_849del
17 human 64506 CPEB1 cytoplasmic polyadenylation... NM_001288820.2 59.7% 59.7% 0_1ins678
18 mouse 12877 Cpeb1 cytoplasmic polyadenylation... NM_001252526.1 91.2% 95.1% (many diffs)
19 mouse 12877 Cpeb1 cytoplasmic polyadenylation... NM_007755.5 90.4% 94.3% (many diffs)
20 mouse 12877 Cpeb1 cytoplasmic polyadenylation... NM_001252525.1 90.2% 94.1% (many diffs)
21 mouse 12877 Cpeb1 cytoplasmic polyadenylation... XM_011250787.2 85.3% 88.6% (many diffs)
22 mouse 12877 Cpeb1 cytoplasmic polyadenylation... XM_011250786.2 85.1% 88.5% (many diffs)
23 mouse 12877 Cpeb1 cytoplasmic polyadenylation... XM_011250785.2 84.6% 87.9% (many diffs)
24 mouse 12877 Cpeb1 cytoplasmic polyadenylation... XM_011250784.2 84.4% 87.7% (many diffs)
25 mouse 12877 Cpeb1 cytoplasmic polyadenylation... XM_011250788.2 83.2% 86.5% (many diffs)
26 mouse 12877 Cpeb1 cytoplasmic polyadenylation... XM_011250790.2 78.5% 82.1% (many diffs)
27 mouse 12877 Cpeb1 cytoplasmic polyadenylation... XM_017321964.1 78.5% 82.1% (many diffs)
28 mouse 12877 Cpeb1 cytoplasmic polyadenylation... XM_017321965.1 75.6% 77.3% (many diffs)
29 mouse 12877 Cpeb1 cytoplasmic polyadenylation... XM_011250792.1 69.4% 73.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1749
ORF length:
1683
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GTTCCCGCTG GAAGAAGAAG CAGGAAGGAT AAAAGATTGC TGGGACAACC
121AGGAAGCACC TGCTCTCTCC ACGTGTAGTA ATGCCAATAT CTTTCGAAGG ATAAATGCCA
181TATTGGATAA TTCTCTGGAT TTCAGTAGAG TCTGCACTAC ACCTATAAAC CGAGGAATTC
241ATGATCATTT GCCAGACTTC CAGGACTCTG AAGAAACAGT TACAAGCAGG ATGCTTTTCC
301CAACCTCTGC GCAAGAATCT TCCCGTGGCC TCCCAGATGC AAATGACTTG TGCCTTGGCC
361TGCAGTCCCT CAGTCTGACA GGCTGGGACC GACCCTGGAG CACCCAGGAC TCAGATTCCT
421CAGCCCAGAG CAGCACACAC TCGGTACTGA GCATGCTCCA TAACCCACTG GGAAATGTCC
481TAGGAAAACC CCCCTTGAGC TTCCTGCCTC TGGATCCCCT TGGGTCTGAC TTGGTGGACA
541AGTTTCCAGC ACCCTCAGTT AGAGGATCAC GCCTGGACAC CCGGCCCATC CTGGACTCTC
601GATCTAGCAG CCCCTCTGAC TCAGACACCA GTGGCTTCAG CTCTGGATCA GATCATCTCT
661CAGATTTGAT TTCAAGCCTT CGCATTTCTC CACCTCTGCC CTTCCTGTCT CTGTCAGGGG
721GTGGTCCCAG AGACCCTTTA AAGATGGGGG TAGGGTCTCG GATGGACCAA GAGCAAGCTG
781CTCTTGCTGC AGTCACTCCC TCCCCAACCA GTGCTTCAAA GAGATGGCCA GGAGCTTCTG
841TGTGGCCATC CTGGGACCTC CTCGAAGCTC CCAAAGACCC CTTCAGCATA GAGAGAGAGG
901CCAGGCTGCA CCGACAAGCT GCAGCTGTGA ATGAAGCCAC CTGTACCTGG AGTGGCCAGC
961TTCCTCCCCG GAACTATAAG AACCCCATCT ACTCTTGCAA GGTGTTTCTA GGAGGTGTTC
1021CTTGGGATAT TACAGAAGCT GGATTAGTTA ACACCTTCCG TGTTTTTGGC TCTTTGAGTG
1081TGGAGTGGCC TGGTAAGGAT GGCAAGCATC CCCGGTGTCC TCCCAAAGGG TATGTGTATC
1141TGGTCTTCGA ACTAGAGAAG TCTGTCCGAT CCTTGCTTCA GGCTTGCTCT CATGACCCGC
1201TGAGCCCAGA TGGCCTGAGT GAATATTATT TCAAGATGTC CAGCCGAAGG ATGCGCTGCA
1261AGGAGGTGCA GGTGATCCCC TGGGTATTAG CCGACAGTAA CTTTGTCCGG AGCCCATCTC
1321AGAGGCTTGA CCCCAGCAGG ACGGTGTTTG TCGGTGCTCT GCATGGAATG CTAAATGCTG
1381AGGCCCTGGC AGCCATCTTG AACGACCTAT TTGGTGGAGT GGTGTATGCC GGGATTGACA
1441CAGATAAGCA CAAGTATCCC ATTGGTTCTG GTCGTGTGAC TTTCAATAAC CAACGGAGTT
1501ACCTGAAAGC AGTCAGCGCT GCTTTTGTGG AGATCAAAAC CACCAAGTTC ACAAAGAAGG
1561TTCAGATTGA CCCCTACCTA GAAGATTCTC TGTGTCATAT CTGCAGTTCT CAGCCTGGTC
1621CTTTCTTCTG TCGAGATCAG GTCTGCTTCA AATACTTCTG CCGGAGCTGC TGGCACTGGC
1681GGCACAGCAT GGAGGGCCTG CGCCACCACA GCCCCCTGAT GCGGAACCAG AAGAACCGAG
1741ATTCCAGCTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
1801tttgttgcaa cgaac

Download FASTA (ORF) (Full)