Transcript: Mouse XM_011250792.1

PREDICTED: Mus musculus cytoplasmic polyadenylation element binding protein 1 (Cpeb1), transcript variant X9, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cpeb1 (12877)
Length:
2647
CDS:
34..1332

Additional Resources:

NCBI RefSeq record:
XM_011250792.1
NBCI Gene record:
Cpeb1 (12877)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011250792.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000183837 CGTGTGACTTTCAATAACCAA pLKO.1 1066 CDS 100% 3.000 4.200 N CPEB1 n/a
2 TRCN0000240542 GAGGCGTTCCTTGGGATATTA pLKO_005 590 CDS 100% 15.000 12.000 N Cpeb1 n/a
3 TRCN0000240544 CCATCTTGAATGACCTATTTG pLKO_005 986 CDS 100% 13.200 10.560 N Cpeb1 n/a
4 TRCN0000240543 GTCTTTGTTTCTGCACTAATT pLKO_005 1480 3UTR 100% 13.200 9.240 N Cpeb1 n/a
5 TRCN0000240545 TGATTTCAAGCCTTCGCATTT pLKO_005 245 CDS 100% 10.800 7.560 N Cpeb1 n/a
6 TRCN0000202301 GCCATACAGTGCCTTTCCATT pLKO.1 1762 3UTR 100% 4.950 3.465 N Cpeb1 n/a
7 TRCN0000191978 GTAACAAACAAAGGAGACTTT pLKO.1 1838 3UTR 100% 4.950 3.465 N Cpeb1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011250792.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08857 pDONR223 100% 80% 84.3% None (many diffs) n/a
2 ccsbBroad304_08857 pLX_304 0% 80% 84.3% V5 (many diffs) n/a
3 TRCN0000492111 AACCCGCAACATGCCCGGTGGTCA pLX_317 23.2% 80% 84.3% V5 (many diffs) n/a
4 ccsbBroadEn_03954 pDONR223 100% 69.4% 73.1% None (many diffs) n/a
5 ccsbBroad304_03954 pLX_304 0% 69.4% 73.1% V5 (many diffs) n/a
6 TRCN0000466562 CGTCACCCAGTGACCATTACTCCA pLX_317 24% 69.4% 73.1% V5 (many diffs) n/a
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