Construct: ORF ccsbBroadEn_04013
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001922.1_s300c1, BRDN0000395832
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- COLEC11 (78989)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 78989 | COLEC11 | collectin subfamily member 11 | NM_024027.5 | 100% | 100% | |
| 2 | human | 78989 | COLEC11 | collectin subfamily member 11 | NM_001255985.1 | 95% | 95% | 1_42del |
| 3 | human | 78989 | COLEC11 | collectin subfamily member 11 | NM_001255982.2 | 91.1% | 91.1% | 126_127ins72 |
| 4 | human | 78989 | COLEC11 | collectin subfamily member 11 | NM_001255983.1 | 91.1% | 91.1% | 198_199ins72 |
| 5 | human | 78989 | COLEC11 | collectin subfamily member 11 | NM_001255986.1 | 88.4% | 86.3% | (many diffs) |
| 6 | human | 78989 | COLEC11 | collectin subfamily member 11 | XM_005263853.4 | 86.6% | 86.6% | 1_42del;168_169ins72 |
| 7 | human | 78989 | COLEC11 | collectin subfamily member 11 | XM_006711897.3 | 86.6% | 86.6% | 1_42del;240_241ins72 |
| 8 | human | 78989 | COLEC11 | collectin subfamily member 11 | NM_001255984.2 | 82.2% | 82.2% | 126_127ins144 |
| 9 | human | 78989 | COLEC11 | collectin subfamily member 11 | NM_199235.3 | 81.2% | 69.5% | 0_1ins88;114_192del |
| 10 | human | 78989 | COLEC11 | collectin subfamily member 11 | NM_001255988.1 | 79.6% | 77.4% | (many diffs) |
| 11 | human | 78989 | COLEC11 | collectin subfamily member 11 | NM_001255987.1 | 78.4% | 76.3% | (many diffs) |
| 12 | human | 78989 | COLEC11 | collectin subfamily member 11 | NM_001255989.1 | 70.9% | 63.9% | (many diffs) |
| 13 | human | 78989 | COLEC11 | collectin subfamily member 11 | NR_045659.2 | 50.2% | 1_83del;410_602del;1090_1618del | |
| 14 | mouse | 71693 | Colec11 | collectin sub-family member 11 | NM_027866.2 | 86.3% | 91.5% | (many diffs) |
| 15 | mouse | 71693 | Colec11 | collectin sub-family member 11 | NM_001313978.1 | 84.4% | 89.5% | (many diffs) |
| 16 | mouse | 71693 | Colec11 | collectin sub-family member 11 | XM_006515221.2 | 64% | 68.5% | (many diffs) |
| 17 | mouse | 71693 | Colec11 | collectin sub-family member 11 | XM_017315207.1 | 44.3% | 44% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 879
- ORF length:
- 813
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG GGGGAATCTG GCCCTGGTGG GCGTTCTAAT CAGCCTGGCC TTCCTGTCAC 121 TGCTGCCATC TGGACATCCT CAGCCGGCTG GCGATGACGC CTGCTCTGTG CAGATCCTCG 181 TCCCTGGCCT CAAAGGGGAT GCGGGAGAGA AGGGAGACAA AGGCGCCCCC GGACGGCCTG 241 GAAGAGTCGG CCCCACGGGA GAAAAAGGAG ACATGGGGGA CAAAGGACAG AAAGGCAGTG 301 TGGGTCGTCA TGGAAAAATT GGTCCCATTG GCTCTAAAGG TGAGAAAGGA GATTCCGGTG 361 ACATAGGACC CCCTGGTCCT AATGGAGAAC CAGGCCTCCC ATGTGAGTGC AGCCAGCTGC 421 GCAAGGCCAT CGGGGAGATG GACAACCAGG TCTCTCAGCT GACCAGCGAG CTCAAGTTCA 481 TCAAGAATGC TGTCGCCGGT GTGCGCGAGA CGGAGAGCAA GATCTACCTG CTGGTGAAGG 541 AGGAGAAGCG CTACGCGGAC GCCCAGCTGT CCTGCCAGGG CCGCGGGGGC ACGCTGAGCA 601 TGCCCAAGGA CGAGGCTGCC AATGGCCTGA TGGCCGCATA CCTGGCGCAA GCCGGCCTGG 661 CCCGTGTCTT CATCGGCATC AACGACCTGG AGAAGGAGGG CGCCTTCGTG TACTCTGACC 721 ACTCCCCCAT GCGGACCTTC AACAAGTGGC GCAGCGGTGA GCCCAACAAT GCCTACGACG 781 AGGAGGACTG CGTGGAGATG GTGGCCTCGG GCGGCTGGAA CGACGTGGCC TGCCACACCA 841 CCATGTACTT CATGTGTGAG TTTGACAAGG AGAACATGTG CCCAACTTTC TTGTACAAAG 901 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac