Transcript: Human XM_006711897.3

PREDICTED: Homo sapiens collectin subfamily member 11 (COLEC11), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
COLEC11 (78989)
Length:
1327
CDS:
16..801

Additional Resources:

NCBI RefSeq record:
XM_006711897.3
NBCI Gene record:
COLEC11 (78989)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006711897.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000159749 GCTGTTGTCTAAACTGAGAAA pLKO.1 930 3UTR 100% 4.950 3.960 N COLEC11 n/a
2 TRCN0000158589 CTGAAGAAGCAGAGTTTCATT pLKO.1 999 3UTR 100% 5.625 3.938 N COLEC11 n/a
3 TRCN0000158528 CATGTACTTCATGTGTGAGTT pLKO.1 762 CDS 100% 4.950 3.465 N COLEC11 n/a
4 TRCN0000163584 GAAAGGAGATTCCGGTGACAT pLKO.1 264 CDS 100% 4.950 3.465 N COLEC11 n/a
5 TRCN0000159096 GCAGAGTTTCATTACCTGTAT pLKO.1 1007 3UTR 100% 4.950 3.465 N COLEC11 n/a
6 TRCN0000158659 CTTCATGTGTGAGTTTGACAA pLKO.1 768 CDS 100% 4.950 2.970 N COLEC11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006711897.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04013 pDONR223 100% 86.6% 86.6% None 1_42del;240_241ins72 n/a
2 ccsbBroad304_04013 pLX_304 0% 86.6% 86.6% V5 1_42del;240_241ins72 n/a
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