Transcript: Human NR_045659.2

Homo sapiens collectin subfamily member 11 (COLEC11), transcript variant 11, non-coding RNA.

Source:
NCBI, updated 2019-09-30
Taxon:
Homo sapiens (human)
Gene:
COLEC11 (78989)
Length:
1618
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_045659.2
NBCI Gene record:
COLEC11 (78989)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_045659.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000159749 GCTGTTGTCTAAACTGAGAAA pLKO.1 1221 3UTR 100% 4.950 3.960 N COLEC11 n/a
2 TRCN0000158589 CTGAAGAAGCAGAGTTTCATT pLKO.1 1290 3UTR 100% 5.625 3.938 N COLEC11 n/a
3 TRCN0000158528 CATGTACTTCATGTGTGAGTT pLKO.1 1053 3UTR 100% 4.950 3.465 N COLEC11 n/a
4 TRCN0000163584 GAAAGGAGATTCCGGTGACAT pLKO.1 362 3UTR 100% 4.950 3.465 N COLEC11 n/a
5 TRCN0000159096 GCAGAGTTTCATTACCTGTAT pLKO.1 1298 3UTR 100% 4.950 3.465 N COLEC11 n/a
6 TRCN0000164191 CAAAGGACAGAAAGGCAGTGT pLKO.1 299 3UTR 100% 2.640 1.848 N COLEC11 n/a
7 TRCN0000163561 GCTCTAAAGGTGAGAAAGGAG pLKO.1 349 3UTR 100% 2.640 1.848 N COLEC11 n/a
8 TRCN0000158917 CTAAAGGTGAGAAAGGAGATT pLKO.1 352 3UTR 100% 4.950 2.970 N COLEC11 n/a
9 TRCN0000158659 CTTCATGTGTGAGTTTGACAA pLKO.1 1059 3UTR 100% 4.950 2.970 N COLEC11 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_045659.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04013 pDONR223 100% 50.2% None 1_83del;410_602del;1090_1618del n/a
2 ccsbBroad304_04013 pLX_304 0% 50.2% V5 1_83del;410_602del;1090_1618del n/a
Download CSV