Construct: ORF ccsbBroadEn_04050
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009538.1_s300c1, BRDN0000385895
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C11orf49 (79096)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79096 | C11orf49 | chromosome 11 open reading ... | NM_001003677.3 | 100% | 100% | |
| 2 | human | 79096 | C11orf49 | chromosome 11 open reading ... | NM_024113.5 | 98.2% | 98.2% | 821_822insGCTTCTTCCCTTCTTCAG |
| 3 | human | 79096 | C11orf49 | chromosome 11 open reading ... | NM_001003678.3 | 86.6% | 81.3% | (many diffs) |
| 4 | human | 79096 | C11orf49 | chromosome 11 open reading ... | XM_006718315.2 | 83.6% | 83.4% | (many diffs) |
| 5 | human | 79096 | C11orf49 | chromosome 11 open reading ... | XM_011520364.2 | 83.5% | 83.3% | 1_76del;122_123ins103 |
| 6 | human | 79096 | C11orf49 | chromosome 11 open reading ... | NM_001278222.1 | 81.8% | 81.6% | 1_76del;122_123ins103;794_795insGCTTCTTCCCTTCTTCAG |
| 7 | human | 79096 | C11orf49 | chromosome 11 open reading ... | NM_001003676.2 | 81.3% | 81.3% | 822_823ins189 |
| 8 | human | 79096 | C11orf49 | chromosome 11 open reading ... | XM_017018276.2 | 78.8% | 76.8% | (many diffs) |
| 9 | human | 79096 | C11orf49 | chromosome 11 open reading ... | XM_011520365.3 | 78.5% | 75% | (many diffs) |
| 10 | human | 79096 | C11orf49 | chromosome 11 open reading ... | XM_017018277.2 | 75% | 72.1% | 0_1ins121;28_29ins131 |
| 11 | human | 79096 | C11orf49 | chromosome 11 open reading ... | XM_017018278.1 | 71.2% | 71.2% | 0_1ins291 |
| 12 | human | 79096 | C11orf49 | chromosome 11 open reading ... | XM_017018279.1 | 71.2% | 71.2% | 0_1ins291 |
| 13 | human | 79096 | C11orf49 | chromosome 11 open reading ... | XM_017018280.1 | 71.2% | 71.2% | 0_1ins291 |
| 14 | human | 79096 | C11orf49 | chromosome 11 open reading ... | XM_017018281.1 | 71.2% | 71.2% | 0_1ins291 |
| 15 | human | 79096 | C11orf49 | chromosome 11 open reading ... | XM_017018282.1 | 69.4% | 69.4% | 0_1ins291;530_531insGCTTCTTCCCTTCTTCAG |
| 16 | human | 79096 | C11orf49 | chromosome 11 open reading ... | NR_103471.2 | 51.9% | (many diffs) | |
| 17 | human | 79096 | C11orf49 | chromosome 11 open reading ... | NR_103472.2 | 51.6% | (many diffs) | |
| 18 | mouse | 228356 | 1110051M20Rik | RIKEN cDNA 1110051M20 gene | NM_175123.4 | 86.4% | 91.9% | (many diffs) |
| 19 | mouse | 228356 | 1110051M20Rik | RIKEN cDNA 1110051M20 gene | XM_011239456.2 | 80% | 85.1% | (many diffs) |
| 20 | mouse | 228356 | 1110051M20Rik | RIKEN cDNA 1110051M20 gene | NM_001311144.1 | 76.9% | 77.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1077
- ORF length:
- 1011
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TAGGCATGCT GAGTCCGGAG CGCCTAGCCC TACCGGACTA CGAGTATCTG GCTCAGCGAC 121 ATGTCCTCAC CTACATGGAG GATGCAGTGT GCCAGCTGCT AGAAAACAGG GAAGATATTA 181 GCCAATATGG AATTGCCAGG TTCTTCACTG AATATTTTAA CAGTGTATGC CAGGGAACAC 241 ACATTCTCTT TCGAGAATTC AGCTTCGTCC AAGCCACCCC CCACAATAGG GTATCATTTT 301 TACGGGCCTT CTGGAGATGC TTCCGAACTG TGGGCAAAAA TGGCGATTTG CTGACCATGA 361 AAGAATATCA CTGTTTGCTG CAATTACTGT GTCCTGATTT CCCGCTGGAG CTCACTCAGA 421 AAGCAGCCAG GATTGTGCTC ATGGACGATG CCATGGACTG CTTGATGTCT TTTTCAGATT 481 TCCTCTTTGC CTTCCAGATC CAGTTTTACT ACTCAGAATT CCTGGACAGT GTGGCTGCCA 541 TCTATGAGGA CCTGCTGTCA GGCAAGAACC CCAACACAGT GATTGTGCCG ACGTCGTCCA 601 GTGGGCAGCA CCGCCAACGA CCTGCCTTGG GCGGGGCCGG CACGCTGGAG GGCGTGGAGG 661 CGTCGCTGTT CTACCAGTGT CTGGAAAACC TGTGTGATCG GCACAAGTAC AGCTGCCCAC 721 CCCCAGCACT TGTCAAAGAG GCCCTCAGCA ATGTTCAGAG ACTGACCTTC TATGGATTCC 781 TCATGGCTCT CTCAAAGCAC CGTGGAATCA ACCAAGCCCT CGGAGCTTTG CCTGACAAGG 841 GGGATCTGAT GCACGACCCA GCAATGGATG AAGAGCTGGA ACGGCTGCTT CTTCCCTTCT 901 TCAGGCTGGC CCAGGTCCCA GGCCTGGTCA ACTCGGTCAC AGCCAGTCCA GAGGCCAGTT 961 GCCTGCCTTC CCGGACCCCT CCCCGGGTTG GCTCTCCCTG GAGACCTCTC CATCATTCCC 1021 GAAAAGTGGA TGGAGAGAGT GATGGCTCCA CTGAAGAGAC AGACGAGTCG GAGACTTGCC 1081 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 1141 aac