Construct: ORF ccsbBroadEn_04089

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016566.1_s300c1, BRDN0000395422
DNA Barcode:
None
Epitope Tag:
None
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
ACSS3 (79611)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79611 ACSS3 acyl-CoA synthetase short c... NM_024560.4 100% 100%
2 human 79611 ACSS3 acyl-CoA synthetase short c... NM_001330242.2 99.8% 99.8% 307_308insGGT
3 human 79611 ACSS3 acyl-CoA synthetase short c... XR_944720.3 79.9% 1_84del;1803_1928del;2024_2025ins244
4 human 79611 ACSS3 acyl-CoA synthetase short c... XM_005269151.5 65.7% 65.7% 1355_1360delGTATAA;1363delC;1365_1366ins700
5 human 79611 ACSS3 acyl-CoA synthetase short c... NM_001330243.2 53.6% 53.6% 0_1ins954
6 mouse 380660 Acss3 acyl-CoA synthetase short-c... NM_001142804.1 85.7% 90.1% (many diffs)
7 mouse 380660 Acss3 acyl-CoA synthetase short-c... NM_198636.3 60.5% 62.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2124
ORF length:
2058
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttgAGATGAA ACCGTCTTGG CTGCAGTGTC GTAAAGTCAC CAGCGCCGGG GGGCTCGGAG
121GGCCCTTGCC TGGGTCCTCT CCGGCCCGGG GAGCCGGTGC GGCCCTCAGG GCTTTAGTGG
181TCCCGGGCCC GCGGGGCGGT CTCGGGGGCC GGGGATGCAG GGCACTGTCC TCCGGCAGTG
241GCAGCGAGTA CAAGACCCAC TTCGCAGCCT CGGTGACCGA CCCCGAGAGG TTCTGGGGCA
301AAGCTGCCGA GCAGATCAGC TGGTACAAGC CCTGGACCAA AACGCTGGAG AACAAACACT
361CGCCCTCTAC CAGGTGGTTT GTGGAAGGAA TGCTTAACAT TTGTTACAAT GCCGTTGATC
421GTCATATTGA AAATGGTAAA GGGGATAAGA TTGCTATCAT CTATGACAGT CCTGTTACAA
481ACACTAAAGC AACCTTTACC TATAAAGAAG TTCTGGAGCA GGTCTCCAAG CTGGCTGGTG
541TCTTGGTCAA GCATGGCATC AAGAAAGGTG ACACTGTGGT TATCTACATG CCTATGATCC
601CACAGGCGAT GTATACCATG TTGGCATGTG CAAGGATAGG TGCCATCCAC AGTCTCATAT
661TTGGAGGATT TGCTTCCAAA GAACTAAGTA GTCGCATTGA TCATGTAAAG CCCAAGGTGG
721TTGTTACAGC ATCATTTGGC ATTGAACCTG GAAGGAGGGT AGAGTACGTA CCACTTGTAG
781AAGAAGCGCT AAAAATAGGA CAACACAAAC CAGACAAAAT TCTCATTTAT AATCGTCCAA
841ATATGGAGGC GGTTCCTTTG GCTCCCGGTC GTGACCTTGA TTGGGATGAA GAGATGGCAA
901AAGCCCAGTC ACATGACTGT GTTCCTGTTC TTTCAGAACA CCCACTGTAT ATTCTTTACA
961CATCTGGCAC AACGGGGTTA CCTAAGGGTG TGATTAGGCC CACTGGGGGA TACGCTGTCA
1021TGCTACACTG GTCAATGTCT TCCATATACG GACTTCAACC CGGAGAGGTG TGGTGGGCAG
1081CTTCTGACTT AGGCTGGGTT GTTGGACATT CCTATATCTG CTATGGACCT CTTCTTCATG
1141GGAACACAAC AGTTTTATAT GAGGGGAAGC CTGTGGGAAC ACCAGATGCT GGCGCTTATT
1201TCCGTGTGCT TGCAGAGCAT GGAGTAGCTG CCTTGTTTAC AGCACCAACT GCAATTAGAG
1261CAATCCGTCA ACAGGACCCT GGGGCAGCTT TGGGGAAGCA GTACTCTCTG ACAAGGTTCA
1321AAACATTATT TGTGGCTGGA GAACGATGTG ATGTAGAGAC CCTGGAATGG TCCAAAAATG
1381TCTTCAGAGT ACCTGTCTTA GACCATTGGT GGCAAACTGA GACTGGATCT CCAATTACTG
1441CGTCATGTGT TGGATTAGGC AATTCTAAAA CACCTCCACC AGGGCAAGCA GGAAAAAGCG
1501TCCCAGGATA CAATGTTATG ATTTTGGATG ACAACATGCA AAAACTGAAG GCTCGGTGTT
1561TAGGAAATAT TGTGGTAAAG TTACCATTGC CACCTGGGGC TTTTTCAGGA CTCTGGAAGA
1621ATCAGGAAGC ATTCAAGCAT TTATACTTTG AAAAATTTCC TGGATATTAT GATACCATGG
1681ATGCTGGTTA CATGGATGAA GAAGGCTATT TGTATGTTAT GTCTCGAGTG GATGATGTAA
1741TAAATGTTGC AGGTCACAGA ATTTCTGCAG GCGCCATTGA AGAGTCAATC CTTTCCCATG
1801GTACCGTGGC AGACTGTGCT GTTGTTGGCA AGGAAGATCC CTTAAAAGGT CATGTCCCCT
1861TAGCACTCTG TGTATTGAGA AAAGATATAA ATGCAACAGA GGAGCAAGTT TTGGAAGAAA
1921TTGTGAAACA CGTTAGACAG AACATTGGCC CTGTGGCTGC TTTTCGAAAT GCAGTGTTTG
1981TCAAACAGCT ACCCAAAACC AGATCTGGCA AGATCCCCCG ATCAGCTTTA TCTGCCATTG
2041TCAATGGCAA GCCATACAAG ATAACTTCTA CAATTGAAGA CCCCAGCATT TTTGGCCACG
2101TAGAAGAAAT GCTGAAGCAA GCATAATcaa ctttcttgta caaagttggc attataagaa
2161agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)