Construct: ORF ccsbBroadEn_04123
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009350.1_s300c1, BRDN0000390241
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KATNBL1 (79768)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79768 | KATNBL1 | katanin regulatory subunit ... | NM_024713.3 | 100% | 100% | |
| 2 | human | 79768 | KATNBL1 | katanin regulatory subunit ... | XM_017022571.2 | 100% | 100% | |
| 3 | human | 79768 | KATNBL1 | katanin regulatory subunit ... | XM_017022572.1 | 100% | 100% | |
| 4 | human | 79768 | KATNBL1 | katanin regulatory subunit ... | XM_017022573.2 | 100% | 100% | |
| 5 | human | 79768 | KATNBL1 | katanin regulatory subunit ... | XM_017022574.1 | 100% | 100% | |
| 6 | human | 79768 | KATNBL1 | katanin regulatory subunit ... | XM_005254668.4 | 96.1% | 96.7% | 884_892delTCCTCTGCGinsA;894_895ins26 |
| 7 | human | 79768 | KATNBL1 | katanin regulatory subunit ... | XM_017022575.2 | 74.6% | 74.6% | 556_557ins231 |
| 8 | human | 729176 | KATNBL1P6 | katanin regulatory subunit ... | NR_003954.1 | 41.4% | (many diffs) | |
| 9 | mouse | 72425 | Katnbl1 | katanin p80 subunit B like 1 | NM_024254.3 | 87.3% | 86.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 978
- ORF length:
- 912
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC ATCAGAAACC CACAATGTTA AAAAACGGAA CTTTTGTAAT AAGATTGAGG 121 ATCATTTCAT TGATCTTCCT AGAAAAAAGA TCTCTAATTT CACTAATAAG AACATGAAGG 181 AGGTTAAGAA ATCTCCAAAA CAGTTGGCTG CTTACATAAA TAGAACAGTT GGACAAACTG 241 TGAAAAGCCC AGATAAACTT CGTAAAGTGA TCTATCGCAG AAAGAAAGTT CATCATCCCT 301 TTCCAAATCC TTGTTACAGA AAAAAACAGT CCCCTGGAAG TGGGGGCTGT GACATGGCAA 361 ATAAAGAAAA TGAACTGGCT TGTGCAGGCC ACCTGCCTGA AAAATTACAC CATGATAGTC 421 GAACATATTT GGTTAACTCC AGTGATTCTG GTTCTTCACA GACAGAAAGC CCATCATCAA 481 AATATAGTGG GTTTTTTTCT GAGGTTTCTC AGGACCATGA AACAATGGCC CAAGTTTTGT 541 TCAGCAGGAA TATGAGATTG AATGTAGCTT TAACTTTCTG GAGAAAGAGA AGTATAAGTG 601 AACTTGTAGC TTATTTGTTG AGGATAGAAG ATCTTGGCGT TGTGGTAGAT TGCCTTCCTG 661 TGCTCACCAA TTGTTTACAG GAAGAAAAAC AATATATCTC ACTTGGCTGC TGTGTTGACT 721 TGTTGCCTCT AGTAAAGTCA CTACTTAAAA GCAAATTTGA AGAATATGTT ATAGTTGGTT 781 TAAACTGGCT TCAAGCAGTC ATTAAAAGGT GGTGGTCAGA ACTATCATCC AAAACAGAAA 841 TTATAAATGA TGGAAATATT CAAATTTTAA AACAACAATT AAGTGGATTA TGGGAACAGG 901 AAAACCATCT TACTTTGGTT CCAGGATATA CTGGTAATAT AGCTAAGGAT GTAGATGCTT 961 ATTTATTACA GTTACATTGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 1021 gcttatcaat ttgttgcaac gaac