Transcript: Human XM_005254668.4

PREDICTED: Homo sapiens katanin regulatory subunit B1 like 1 (KATNBL1), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
KATNBL1 (79768)
Length:
2191
CDS:
133..1029

Additional Resources:

NCBI RefSeq record:
XM_005254668.4
NBCI Gene record:
KATNBL1 (79768)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005254668.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000158529 CCATGATAGTCGAACATATTT pLKO.1 477 CDS 100% 15.000 9.000 N KATNBL1 n/a
2 TRCN0000338719 CACCATGATAGTCGAACATAT pLKO_005 475 CDS 100% 13.200 7.920 N KATNBL1 n/a
3 TRCN0000162392 CATGAAACAATGGCCCAAGTT pLKO.1 583 CDS 100% 4.950 2.970 N KATNBL1 n/a
4 TRCN0000163848 CCATGAAACAATGGCCCAAGT pLKO.1 582 CDS 100% 4.050 2.430 N KATNBL1 n/a
5 TRCN0000264496 CCAGGATATACTGGTAATATA pLKO_005 988 CDS 100% 15.000 7.500 Y Katnbl1 n/a
6 TRCN0000338793 CCAGGATATACTGGTAATATA pLKO_005 988 CDS 100% 15.000 7.500 Y KATNBL1 n/a
7 TRCN0000338788 TCTAGTAAAGTCACTACTTAA pLKO_005 795 CDS 100% 13.200 6.600 Y KATNBL1 n/a
8 TRCN0000159599 GTTCCAGGATATACTGGTAAT pLKO.1 985 CDS 100% 10.800 5.400 Y KATNBL1 n/a
9 TRCN0000160272 CCAATTGTTTACAGGAAGAAA pLKO.1 734 CDS 100% 5.625 2.813 Y KATNBL1 n/a
10 TRCN0000158775 GCTTATTTGTTGAGGATAGAA pLKO.1 676 CDS 100% 5.625 2.813 Y KATNBL1 n/a
11 TRCN0000338717 GCTTATTTGTTGAGGATAGAA pLKO_005 676 CDS 100% 5.625 2.813 Y KATNBL1 n/a
12 TRCN0000161750 CGTAAAGTGATCTATCGCAGA pLKO.1 328 CDS 100% 2.160 1.080 Y KATNBL1 n/a
13 TRCN0000158861 GAGGATCATTTCATTGATCTT pLKO.1 184 CDS 100% 0.495 0.248 Y KATNBL1 n/a
14 TRCN0000264497 AGTGAACTTGTAGCTTATTTA pLKO_005 664 CDS 100% 15.000 7.500 Y Katnbl1 n/a
15 TRCN0000138391 CGCCTGTAATCCTAGCACTTT pLKO.1 1420 3UTR 100% 4.950 2.475 Y DENND6A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005254668.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04123 pDONR223 100% 96.1% 96.7% None 884_892delTCCTCTGCGinsA;894_895ins26 n/a
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