Construct: ORF ccsbBroadEn_04190
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005524.1_s300c1, BRDN0000392567
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC92 (80212)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 80212 | CCDC92 | coiled-coil domain containi... | NM_001304957.2 | 100% | 100% | |
| 2 | human | 80212 | CCDC92 | coiled-coil domain containi... | NM_001304958.2 | 100% | 100% | |
| 3 | human | 80212 | CCDC92 | coiled-coil domain containi... | NM_001304959.2 | 100% | 100% | |
| 4 | human | 80212 | CCDC92 | coiled-coil domain containi... | NM_001304960.2 | 100% | 100% | |
| 5 | human | 80212 | CCDC92 | coiled-coil domain containi... | NM_025140.3 | 100% | 100% | |
| 6 | human | 80212 | CCDC92 | coiled-coil domain containi... | XM_005253624.2 | 100% | 100% | |
| 7 | human | 80212 | CCDC92 | coiled-coil domain containi... | XM_024449192.1 | 100% | 100% | |
| 8 | human | 80212 | CCDC92 | coiled-coil domain containi... | XM_024449193.1 | 100% | 100% | |
| 9 | human | 80212 | CCDC92 | coiled-coil domain containi... | XM_024449194.1 | 100% | 100% | |
| 10 | human | 80212 | CCDC92 | coiled-coil domain containi... | XM_024449195.1 | 100% | 100% | |
| 11 | human | 80212 | CCDC92 | coiled-coil domain containi... | XM_024449196.1 | 100% | 100% | |
| 12 | human | 80212 | CCDC92 | coiled-coil domain containi... | XM_024449197.1 | 100% | 100% | |
| 13 | human | 80212 | CCDC92 | coiled-coil domain containi... | XM_024449199.1 | 100% | 100% | |
| 14 | human | 80212 | CCDC92 | coiled-coil domain containi... | NM_001304961.2 | 94.8% | 94.8% | 0_1ins51 |
| 15 | mouse | 215707 | Ccdc92 | coiled-coil domain containi... | NM_144819.2 | 77.2% | 82.2% | (many diffs) |
| 16 | mouse | 215707 | Ccdc92 | coiled-coil domain containi... | XM_006504287.3 | 77.2% | 82.2% | (many diffs) |
| 17 | mouse | 215707 | Ccdc92 | coiled-coil domain containi... | XM_017320799.1 | 46% | 50.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1059
- ORF length:
- 993
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC TTCACCACAT TTCTCGAGTT ACGATGAAGG TCCTCTGGAT GTCAGCATGG 121 CAGCCACAAA CCTGGAGAAC CAGCTGCACA GCGCACAGAA GAACCTCCTG TTCCTTCAGC 181 GGGAGCATGC CAGCACGCTC AAGGGGCTGC ACTCCGAGAT CAGGCGGCTG CAGCAGCACT 241 GCACAGATTT AACATATGAG CTGACAGTCA AAAGTTCGGA ACAGACAGGA GACGGGACTT 301 CTAAAAGCAG TGAATTAAAG AAAAGATGTG AAGAGCTGGA AGCCCAACTG AAAGTGAAAG 361 AGAACGAAAA TGCTGAGTTG TTGAAAGAAC TGGAGCAGAA AAACGCGATG ATCACAGTGC 421 TGGAGAACAC CATCAAGGAG CGAGAGAAGA AGTACCTGGA GGAGCTGAAG GCCAAGAGTC 481 ACAAGCTGAC CCTGCTGTCT AGCGAGCTGG AGCAGCGGGC CAGCACCATC GCCTACCTGA 541 CCTCCCAGCT GCACGCCGCC AAGAAGAAGC TCATGAGCTC CAGCGGGACC TCAGATGCCA 601 GCCCGTCAGG GAGCCCCGTG CTGGCCAGCT ACAAGCCAGC GCCCCCCAAA GACAAGCTAC 661 CCGAAACGCC TCGCCGCCGC ATGAAAAAGA GCCTCTCAGC CCCCTTGCAC CCGGAATTTG 721 AAGAGGTCTA CAGATTCGGG GCAGAGAGCA GGAAACTCCT TTTGCGGGAA CCAGTGGATG 781 CTATGCCCGA CCCCACCCCA TTTCTGCTGG CTAGGGAGTC CGCCGAGGTC CACCTCATCA 841 AAGAGAGGCC CCTCGTCATC CCCCCCATCG CCTCCGACCG AAGCGGCGAG CAGCACAGCC 901 CGGCCCGCGA AAAGCCGCAC AAGGCCCACG TCGGGGTGGC ACATCGGATC CACCACGCCA 961 CCCCGCCGCA GGCCCAGCCC GAGGTGAAGA CCCTGGCGGT CGACCAGGTG AACGGAGGCA 1021 AGGTGGTGAG GAAGCACTCA GGGACGGACA GAACTGTGTG CCCAACTTTC TTGTACAAAG 1081 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac