Transcript: Mouse XM_006504287.3

PREDICTED: Mus musculus coiled-coil domain containing 92 (Ccdc92), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ccdc92 (215707)
Length:
1711
CDS:
228..1172

Additional Resources:

NCBI RefSeq record:
XM_006504287.3
NBCI Gene record:
Ccdc92 (215707)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006504287.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000216038 CTGATTGTGTGTTCATAATTT pLKO.1 1633 3UTR 100% 15.000 21.000 N Ccdc92 n/a
2 TRCN0000200366 GATAAGCCACACAAGACGCAT pLKO.1 1020 CDS 100% 2.640 3.696 N Ccdc92 n/a
3 TRCN0000197752 GATCTAACATATGAGCTGACA pLKO.1 357 CDS 100% 0.000 0.000 N Ccdc92 n/a
4 TRCN0000177564 CTAGAATATGAATCGCCTGAA pLKO.1 1445 3UTR 100% 4.050 3.240 N Ccdc92 n/a
5 TRCN0000197565 CACTGCACAGATCTAACATAT pLKO.1 348 CDS 100% 13.200 9.240 N Ccdc92 n/a
6 TRCN0000200181 CTGAAGGTGAAGAGCCACAAA pLKO.1 576 CDS 100% 4.950 3.465 N Ccdc92 n/a
7 TRCN0000182408 GAAGAGCCACAAACTGAGCAT pLKO.1 584 CDS 100% 2.640 1.848 N Ccdc92 n/a
8 TRCN0000177565 CACAGATCTAACATATGAGCT pLKO.1 353 CDS 100% 0.000 0.000 N Ccdc92 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006504287.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04190 pDONR223 100% 77.2% 82.2% None (many diffs) n/a
2 ccsbBroad304_04190 pLX_304 0% 77.2% 82.2% V5 (many diffs) n/a
3 TRCN0000471853 ACACTAAGATACTGTAGAAAGGCC pLX_317 34.6% 77.2% 82.2% V5 (many diffs) n/a
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