Construct: ORF ccsbBroadEn_04256

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003116.1_s300c1, BRDN0000385209
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RNF146 (81847)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 81847 RNF146 ring finger protein 146 NM_001242844.1 100% 100%
2 human 81847 RNF146 ring finger protein 146 NM_001242845.1 100% 100%
3 human 81847 RNF146 ring finger protein 146 NM_001242846.1 100% 100%
4 human 81847 RNF146 ring finger protein 146 NM_001242847.1 100% 100%
5 human 81847 RNF146 ring finger protein 146 NM_001242848.1 100% 100%
6 human 81847 RNF146 ring finger protein 146 NM_001242852.1 100% 100%
7 human 81847 RNF146 ring finger protein 146 NM_030963.3 100% 100%
8 human 81847 RNF146 ring finger protein 146 XM_006715571.4 100% 100%
9 human 81847 RNF146 ring finger protein 146 XM_011536161.3 100% 100%
10 human 81847 RNF146 ring finger protein 146 XM_011536162.3 100% 100%
11 human 81847 RNF146 ring finger protein 146 XM_011536163.3 100% 100%
12 human 81847 RNF146 ring finger protein 146 XM_011536164.3 100% 100%
13 human 81847 RNF146 ring finger protein 146 XM_017011338.2 100% 100%
14 human 81847 RNF146 ring finger protein 146 XM_017011339.2 100% 100%
15 human 81847 RNF146 ring finger protein 146 XM_017011340.2 100% 100%
16 human 81847 RNF146 ring finger protein 146 XM_017011341.2 100% 100%
17 human 81847 RNF146 ring finger protein 146 XM_017011342.2 100% 100%
18 human 81847 RNF146 ring finger protein 146 XM_017011343.2 100% 100%
19 human 81847 RNF146 ring finger protein 146 XM_024446563.1 100% 100%
20 human 81847 RNF146 ring finger protein 146 XM_024446564.1 100% 100%
21 human 81847 RNF146 ring finger protein 146 NM_001242849.1 99.7% 99.7% 1_3delATG
22 human 81847 RNF146 ring finger protein 146 NM_001242850.1 99.7% 99.7% 1_3delATG
23 human 81847 RNF146 ring finger protein 146 NM_001242851.1 99.7% 99.7% 1_3delATG
24 human 81847 RNF146 ring finger protein 146 XM_017011336.2 99.7% 99.7% 1_3delATG
25 mouse 68031 Rnf146 ring finger protein 146 NM_001110196.1 89.1% 92.2% (many diffs)
26 mouse 68031 Rnf146 ring finger protein 146 NM_001110197.1 89.1% 92.2% (many diffs)
27 mouse 68031 Rnf146 ring finger protein 146 NM_001110198.1 89.1% 92.2% (many diffs)
28 mouse 68031 Rnf146 ring finger protein 146 NM_001284279.1 89.1% 92.2% (many diffs)
29 mouse 68031 Rnf146 ring finger protein 146 NM_026518.4 89.1% 92.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1140
ORF length:
1074
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TGGCTGTGGT GAAATTGATC ATTCAATAAA CATGCTTCCT ACAAACAGGA
121AAGCGAACGA GTCCTGTTCT AATACTGCAC CTTCTTTAAC CGTCCCTGAA TGTGCCATTT
181GTCTGCAAAC ATGTGTTCAT CCAGTCAGTC TGCCCTGTAA GCACGTTTTC TGCTATCTAT
241GTGTAAAAGG AGCTTCATGG CTTGGAAAGC GGTGTGCTCT TTGTCGACAA GAAATTCCCG
301AGGATTTCCT TGACAAGCCA ACCTTGTTGT CACCAGAAGA ACTCAAGGCA GCAAGTAGAG
361GAAATGGTGA ATATGCATGG TATTATGAAG GAAGAAATGG GTGGTGGCAG TACGATGAGC
421GCACTAGTAG AGAGCTGGAA GATGCTTTTT CCAAAGGTAA AAAGAACACT GAAATGTTAA
481TTGCTGGCTT TCTGTATGTC GCTGATCTTG AAAACATGGT TCAATATAGG AGAAATGAAC
541ATGGACGTCG CAGGAAGATT AAGCGAGATA TAATAGATAT ACCAAAGAAG GGAGTAGCTG
601GACTTAGGCT AGACTGTGAT GCTAATACCG TAAACCTAGC AAGAGAGAGC TCTGCTGACG
661GAGCGGACAG TGTATCAGCA CAGAGTGGAG CTTCTGTTCA GCCCCTAGTG TCTTCTGTAA
721GGCCCCTAAC ATCAGTAGAT GGTCAGTTAA CAAGCCCTGC AACACCATCC CCTGATGCAA
781GCACTTCTCT GGAAGACTCT TTTGCTCATT TACAACTCAG TGGAGACAAC ACAGCTGAAA
841GGAGTCATAG GGGAGAAGGA GAAGAAGATC ATGAATCACC ATCTTCAGGC AGGGTACCAG
901CACCAGACAC CTCCATTGAA GAAACTGAAT CAGATGCCAG TAGTGATAGT GAGGATGTAT
961CTGCAGTTGT TGCACAGCAC TCCTTGACCC AACAGAGACT TTTGGTTTCT AATGCAAACC
1021AGACAGTACC CGATCGATCA GATCGATCGG GAACTGATCG ATCAGTAGCA GGGGGTGGAA
1081CAGTGAGTGT CAGTGTCAGA TCTAGAAGGC CTGATGGACA GTGCACAGTA ACTGAAGTTT
1141ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
1201acgaac

Download FASTA (ORF) (Full)