Construct: ORF ccsbBroadEn_04325

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014688.1_s300c1, BRDN0000391075
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
C3orf20 (84077)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84077 C3orf20 chromosome 3 open reading f... NM_001184957.2 100% 100%
2 human 84077 C3orf20 chromosome 3 open reading f... NM_001184958.2 100% 100%
3 human 84077 C3orf20 chromosome 3 open reading f... XM_011534154.3 94.7% 94.7% 2129_2257del
4 human 84077 C3orf20 chromosome 3 open reading f... NM_032137.5 86.5% 86.5% 1_366del
5 human 84077 C3orf20 chromosome 3 open reading f... XM_006713341.2 82.5% 82.5% 1_366del;2495_2623del
6 human 84077 C3orf20 chromosome 3 open reading f... XM_006713342.2 82.5% 82.5% 1_366del;2495_2623del
7 human 84077 C3orf20 chromosome 3 open reading f... XM_011534153.3 82.5% 82.5% 1_366del;2495_2623del
8 human 84077 C3orf20 chromosome 3 open reading f... XM_011534157.2 72.7% 68.7% 0_1ins400;112_113ins146;1583_1711del
9 human 84077 C3orf20 chromosome 3 open reading f... XM_006713343.2 60.5% 58% 1_366del;1933_1934ins304;2007_2008ins401
10 human 84077 C3orf20 chromosome 3 open reading f... XM_017007310.1 47.5% 43.6% (many diffs)
11 human 84077 C3orf20 chromosome 3 open reading f... XM_011534158.2 46.4% 44.1% 1_366del;1565_1566ins124;1626_1627ins962
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2412
ORF length:
2346
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CCGTCAGGTG CGCACCCACC AGGAGACCCT GAACAGGTTT CAGCAGCAGT
121CCATCCACCT GCTGACGGAG CTCCTCAGAC TGAAGATGAA GGCCATGGTG GAGTCTATGT
181CGGTGGGTGC CAACCCCTTG GACATCACCA GGCGCTTTGT GGAGGCCAGC CAGCTCCTCC
241ACCTCAATGC CAAGGAGATG GCCTTCAACT GCCTGATCAG CACAGCCGGG AGAAGTGGCT
301ACAGCAGCGG ACAGTTGTGG AAAGAGTCCC TCGCAAACAT GTCCGCCATT GGGGTGAACT
361CGCCTTACCA GCTGATCTAC CACTCTTCCA CAGCCTGTCT GAGCTTTTCT CTCTCTGCTG
421GAAAAGAAGC CAAGAAGAAA ATAGGCAAAT CTAGAACTAC AGAAGATGTC AGCATGCCGC
481CCCTGCATCG AGGAGTGGGA ACCCCTGCCA ACAGCCTGGA GTTCAGCGAC CCCTGCCCTG
541AGGCCCGGGA GAAGCTGCAG GAGTTGTGTC GCCACATAGA AGCTGAAAGG GCCACATGGA
601AAGGGAGGAA TATCTCCTAC CCCATGATCT TACGAAACTA CAAGGCAAAG ATGCCCTCTC
661ATCTAATGTT GGCCCGCAAA GGAGACTCTC AGACCCCGGG TTTACATTAC CCTCCCACTG
721CAGGTGCTCA GACTCTCAGC CCCACCTCTC ACCCATCTTC TGCCAACCAT CATTTCAGTC
781AGCATTGTCA AGAGGGGAAG GCACCCAAGA AGGCCTTCAA GTTTCATTAC ACCTTCTATG
841ATGGCTCCTC CTTCGTTTAC TATCCCTCTG GAAACGTCGC TGTATGTCAG ATCCCCACAT
901GCTGCAGAGG GAGAACCATC ACCTGCCTCT TTAATGACAT ACCTGGATTC TCCTTGCTGG
961CCCTATTCAA TACTGAAGGC CAGGGCTGTG TTCACTACAA CCTAAAAACC AGTTGCCCAT
1021ATGTCTTAAT CTTGGATGAG GAAGGTGGGA CCACCAATGA CCAGCAGGGC TATGTAGTCC
1081ACAAGTGGAG CTGGACTTCC AGGACAGAGA CCCTGCTTTC CCTGGAATAC AAGGTGAATG
1141AGGAAATGAA ACTAAAGGTA CTGGGACAGG ACTCCATCAC AGTCACCTTC ACCTCCCTGA
1201ATGAGACAGT AACACTCACT GTGTCGGCCA ACAATTGTCC CCATGGAATG GCATATGACA
1261AACGGCTGAA CCGCAGAATC AGCAACATGG ACGACAAGGT GTATAAGATG AGCCGAGCCC
1321TGGCTGAGAT CAAGAAGCGG TTTCAGAAGA CAGTGACTCA GTTCATTAAT TCTATCTTGC
1381TGGCCGCAGG TCTGTTTACC ATTGAATATC CCACCAAAAA GGAGGAGGAA GAATTTGTTC
1441GGTTCAAGAT GAGATCCAGA ACTCATCCCG AGCGGCTCCC CAAGCTAAGT TTATACTCAG
1501GAGAAAGTCT TTTACGATCT CAGTCAGGCC ACCTGGAATC CTCAATTGCA GAGACTTTGA
1561AGGATGAGCC TGAGTCTGCT CCTGTGAGCC CAGTTCGGAA GACCACCAAA ATCCACACCA
1621AAGCCAAGGT CACATCCAGA GGGAAGGCCC GCGAGGGGCG CAGCCCCACC AGGTGGGCGG
1681CCTTGCCCTC AGACTGCCCG CTGGTGCTGC GGAAGCTCAT GCTCAAGGAA GACACCCGTG
1741CTGGCTGCAA GTGCCTGGTG AAGGCGCCCC TGGTCTCTGA CGTGGAGCTG GAGCGCTTCC
1801TGTTGGCGCC CCGAGACCCC AGCCAAGTGC TGGTGTTTGG GATCATCTCA AGCCAGAACT
1861ACACCAGCAC TGGGCAGCTC CAGTGGCTGC TGAACACTCT CTACAACCAC CAGCAGCGGG
1921GCCGTGGCTC CCCCTGCATC CAGTGCCGGT ATGACTCCTA CCGCCTGCTG CAGTATGACC
1981TGGACAGCCC CCTGCAGGAG GACCCTCCCC TGATGGTGAA GAAGAACTCT GTGGTGCAGG
2041GGATGATTCT GATGTTTGCC GGGGGGAAGC TCATTTTTGG GGGCCGTGTT TTGAATGGAT
2101ATGGCCTCAG CAAGCAGAAT CTGCTGAAAC AGATCTTCCG GTCTCAACAG GATTACAAGA
2161TGGGCTACTT CCTGCCGGAT GACTACAAAT TCAGTGTTCC CAACTCTGTC CTGAGCCTGG
2221AGGATTCTGA ATCAGTCAAG AAAGCCGAGT CAGAAGATAT CCAAGGAAGC AGCTCCTCAT
2281TGGCCCTGGA AGACTATGTG GAGAAGGAGT TATCTCTGGA GGCTGAGAAG ACAAGAGAGC
2341CTGAAGTGGA GCTACATCCT CTCAGCAGGG ACAGCAAGAT AACTAGTTGG AAGAAGCAGG
2401CCTCCAAGAA GTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
2461caatttgttg caacgaac

Download FASTA (ORF) (Full)