Construct: ORF ccsbBroadEn_04338
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017037.1_s300c1, BRDN0000385868
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANTXR1 (84168)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84168 | ANTXR1 | ANTXR cell adhesion molecule 1 | NM_018153.3 | 100% | 100% | |
| 2 | human | 84168 | ANTXR1 | ANTXR cell adhesion molecule 1 | XM_017005077.2 | 96.3% | 94.6% | (many diffs) |
| 3 | human | 84168 | ANTXR1 | ANTXR cell adhesion molecule 1 | XM_017005076.2 | 95.8% | 93.2% | (many diffs) |
| 4 | human | 84168 | ANTXR1 | ANTXR cell adhesion molecule 1 | XM_017005075.2 | 94% | 91.9% | (many diffs) |
| 5 | human | 84168 | ANTXR1 | ANTXR cell adhesion molecule 1 | NM_053034.2 | 88.3% | 85.7% | (many diffs) |
| 6 | human | 84168 | ANTXR1 | ANTXR cell adhesion molecule 1 | NM_032208.2 | 57.7% | 56.2% | (many diffs) |
| 7 | mouse | 69538 | Antxr1 | anthrax toxin receptor 1 | XM_006506564.2 | 56.8% | 60.3% | (many diffs) |
| 8 | mouse | 69538 | Antxr1 | anthrax toxin receptor 1 | NM_054041.2 | 50.1% | 53.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1065
- ORF length:
- 999
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CACGGCGGAG CGGAGAGCCC TCGGCATCGG CTTCCAGTGG CTCTCTTTGG 121 CCACTCTGGT GCTCATCTGC GCCGGGCAAG GGGGACGCAG GGAGGATGGG GGTCCAGCCT 181 GCTACGGCGG ATTTGACCTG TACTTCATTT TGGACAAATC AGGAAGTGTG CTGCACCACT 241 GGAATGAAAT CTATTACTTT GTGGAACAGT TGGCTCACAA ATTCATCAGC CCACAGTTGA 301 GAATGTCCTT TATTGTTTTC TCCACCCGAG GAACAACCTT AATGAAACTG ACAGAAGACA 361 GAGAACAAAT CCGTCAAGGC CTAGAAGAAC TCCAGAAAGT TCTGCCAGGA GGAGACACTT 421 ACATGCATGA AGGATTTGAA AGGGCCAGTG AGCAGATTTA TTATGAAAAC AGACAAGGGT 481 ACAGGACAGC CAGCGTCATC ATTGCTTTGA CTGATGGAGA ACTCCATGAA GATCTCTTTT 541 TCTATTCAGA GAGGGAGGCT AATAGGTCTC GAGATCTTGG TGCAATTGTT TACTGTGTTG 601 GTGTGAAAGA TTTCAATGAG ACACAGCTGG CCCGGATTGC GGACAGTAAG GATCATGTGT 661 TTCCCGTGAA TGACGGCTTT CAGGCTCTGC AAGGCATCAT CCACTCAATT TTGAAGAAGT 721 CCTGCATCGA AATTCTAGCA GCTGAACCAT CCACCATATG TGCAGGAGAG TCATTTCAAG 781 TTGTCGTGAG AGGAAACGGC TTCCGACATG CCCGCAACGT GGACAGGGTC CTCTGCAGCT 841 TCAAGATCAA TGACTCGGTC ACACTCAATG AGAAGCCCTT TTCTGTGGAA GATACTTATT 901 TACTGTGTCC AGCGCCTATC TTAAAAGAAG TTGGCATGAA AGCTGCACTC CAGGTCAGCA 961 TGAACGATGG CCTCTCTTTT ATCTCCAGTT CTGTCATCAT CACCACCACA CACTGTAGCC 1021 TCCACAAAAT TGCATCAGGC CCCACAACAG CTGCTTGCAT GGAATACCCA ACTTTCTTGT 1081 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c