Construct: ORF ccsbBroadEn_04366

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017633.1_s300c1, BRDN0000388928
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CHCHD6 (84303)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84303 CHCHD6 coiled-coil-helix-coiled-co... NM_032343.3 100% 100%
2 human 84303 CHCHD6 coiled-coil-helix-coiled-co... NM_001320610.2 99.5% 99.5% 411_413delGCA
3 human 84303 CHCHD6 coiled-coil-helix-coiled-co... XM_017007321.1 85% 82.2% (many diffs)
4 human 84303 CHCHD6 coiled-coil-helix-coiled-co... XM_024453792.1 84.2% 84.2% 0_1ins111
5 human 84303 CHCHD6 coiled-coil-helix-coiled-co... XM_011513234.1 83.8% 83.8% 0_1ins111;300_302delGCA
6 human 84303 CHCHD6 coiled-coil-helix-coiled-co... XM_017007320.1 82.1% 75.9% (many diffs)
7 human 84303 CHCHD6 coiled-coil-helix-coiled-co... XR_924200.1 80.8% 1_72del;483_573del;865_866insGGC
8 human 84303 CHCHD6 coiled-coil-helix-coiled-co... XM_017007322.2 73.1% 71.6% (many diffs)
9 human 84303 CHCHD6 coiled-coil-helix-coiled-co... XR_924193.2 63.6% (many diffs)
10 human 84303 CHCHD6 coiled-coil-helix-coiled-co... XR_924195.2 61.4% (many diffs)
11 human 84303 CHCHD6 coiled-coil-helix-coiled-co... XM_011513235.3 60.4% 59.5% (many diffs)
12 human 84303 CHCHD6 coiled-coil-helix-coiled-co... XR_924199.2 57% 1_72del;639_889del;1029_1236del
13 human 84303 CHCHD6 coiled-coil-helix-coiled-co... XR_924198.2 56.9% (many diffs)
14 human 84303 CHCHD6 coiled-coil-helix-coiled-co... XR_924192.2 55.6% (many diffs)
15 human 84303 CHCHD6 coiled-coil-helix-coiled-co... XR_924196.2 54.2% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
771
ORF length:
705
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG GAGCACGGAG AGCAGCGAGG GCCGCAGGGT GTCCTTCGGA GTGGACGAGG
121AGGAGCGGGT CCGGGTGCTG CAGGGTGTCC GGCTGTCTGA AAACGTGGTG AACCGCATGA
181AGGAGCCCAG CTCTCCACCC CCTGCTCCCA CATCTTCTAC CTTTGGCCTT CAAGATGGCA
241ACTTGAGAGC CCCTCACAAA GAATCCACAC TGCCCAGGTC GGGGAGCAGT GGTGGCCAGC
301AGCCCTCAGG GATGAAGGAG GGTGTCAAGA GGTATGAACA GGAGCATGCT GCTATCCAGG
361ATAAGCTCTT CCAGGTGGCA AAGAGGGAAA GAGAGGCTGC CACCAAGCAC TCCAAGGCAT
421CCCTGCCCAC GGGCGAAGGC AGCATCAGCC ATGAGGAGCA GAAGTCAGTC CGGCTGGCCA
481GGGAGCTGGA GAGCAGAGAG GCAGAGCTAA GACGCCGTGA CACCTTCTAC AAGGAGCAGC
541TGGAGCGTAT TGAGAGGAAG AATGCTGAGA TGTATAAACT GTCTTCAGAG CAATTCCATG
601AGGCAGCCTC AAAGATGGAG AGCACAATAA AGCCCCGCAG GGTGGAGCCC GTCTGCTCAG
661GGTTGCAGGC CCAGATTCTC CACTGCTACC GAGATCGCCC GCATGAGGTG CTGCTGTGCT
721CGGACCTGGT CAAGGCATAC CAGCGCTGCG TGAGCGCCGC CCACAAGGGC TGCCCAACTT
781TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)