Transcript: Human NM_001320610.2

Homo sapiens coiled-coil-helix-coiled-coil-helix domain containing 6 (CHCHD6), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-05-31
Taxon:
Homo sapiens (human)
Gene:
CHCHD6 (84303)
Length:
1003
CDS:
74..784

Additional Resources:

NCBI RefSeq record:
NM_001320610.2
NBCI Gene record:
CHCHD6 (84303)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001320610.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000122695 GAGCGTATTGAGAGGAAGAAT pLKO.1 554 CDS 100% 5.625 7.875 N CHCHD6 n/a
2 TRCN0000140114 GCCTTCAAGATGGCAACTTGA pLKO.1 234 CDS 100% 0.495 0.396 N CHCHD6 n/a
3 TRCN0000144296 CAAAGATGGAGAGCACAATAA pLKO.1 621 CDS 100% 13.200 9.240 N CHCHD6 n/a
4 TRCN0000122871 GCATGCTGCTATCCAGGATAA pLKO.1 352 CDS 100% 10.800 7.560 N CHCHD6 n/a
5 TRCN0000122342 CCTGAAGAAGGGACCAATCAT pLKO.1 825 3UTR 100% 5.625 3.938 N CHCHD6 n/a
6 TRCN0000139054 CCTCAAAGATGGAGAGCACAA pLKO.1 618 CDS 100% 4.050 2.835 N CHCHD6 n/a
7 TRCN0000139611 CTTTGGCCTTCAAGATGGCAA pLKO.1 229 CDS 100% 2.640 1.848 N CHCHD6 n/a
8 TRCN0000145418 GCTGAGATGTATAAACTGTCT pLKO.1 575 CDS 100% 2.640 1.848 N CHCHD6 n/a
9 TRCN0000139744 CAAGAGGTATGAACAGGAGCA pLKO.1 334 CDS 100% 2.160 1.512 N CHCHD6 n/a
10 TRCN0000122613 GCAGTGACTTGGAGCCCTGAA pLKO.1 810 3UTR 100% 1.350 0.945 N CHCHD6 n/a
11 TRCN0000143684 GAGGAAGAATGCTGAGATGTA pLKO.1 565 CDS 100% 4.950 2.970 N CHCHD6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001320610.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04366 pDONR223 100% 99.5% 99.5% None 411_413delGCA n/a
2 ccsbBroad304_04366 pLX_304 0% 99.5% 99.5% V5 411_413delGCA n/a
3 TRCN0000467250 ACATCTTCCGGCGTCTCCTCGCAG pLX_317 65.6% 99.5% 99.5% V5 411_413delGCA n/a
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