Construct: ORF ccsbBroadEn_04372

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011622.1_s300c1, BRDN0000392491
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
BRMS1L (84312)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84312 BRMS1L BRMS1 like transcriptional ... NM_032352.4 100% 100%
2 human 84312 BRMS1L BRMS1 like transcriptional ... XM_005268128.1 97.8% 97.5% 728_748del
3 human 84312 BRMS1L BRMS1 like transcriptional ... XM_006720275.2 85.1% 85.1% 0_1ins144
4 human 84312 BRMS1L BRMS1 like transcriptional ... XM_017021704.2 85.1% 85.1% 0_1ins144
5 human 84312 BRMS1L BRMS1 like transcriptional ... XM_017021705.1 85.1% 85.1% 0_1ins144
6 human 84312 BRMS1L BRMS1 like transcriptional ... XM_006720274.2 83.3% 83% 0_1ins144;584_604del
7 human 84312 BRMS1L BRMS1 like transcriptional ... XM_017021703.1 83.3% 83% 0_1ins144;584_604del
8 mouse 52592 Brms1l breast cancer metastasis-su... NM_001037756.2 90.7% 99.6% (many diffs)
9 mouse 52592 Brms1l breast cancer metastasis-su... XR_381529.3 34.9% (many diffs)
10 mouse 52592 Brms1l breast cancer metastasis-su... XR_381530.3 29.2% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1035
ORF length:
969
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCC AGTCCATTCC CGAGGGGATA AGAAGGAGAC CAACCATCAC GATGAGATGG
121AGGTGGACTA CGCCGAAAAT GAGGGGAGCA GCTCCGAGGA CGAGGACACT GAGAGCTCGT
181CGGTCTCCGA GGATGGAGAT AGCTCAGAAA TGGATGATGA AGACTGTGAA AGAAGAAGAA
241TGGAATGTTT GGATGAAATG TCCAATCTTG AAAAACAGTT TACCGATCTC AAAGATCAAC
301TTTATAAAGA ACGATTAAGT CAGGTGGATG CAAAACTACA AGAAGTCATA GCTGGAAAAG
361CACCAGAATA CTTGGAACCG CTGGCAACTT TACAGGAAAA TATGCAAATT CGTACAAAGG
421TAGCAGGAAT CTATAGAGAG CTCTGCTTAG AATCTGTAAA GAACAAATAT GAATGTGAAA
481TTCAAGCTTC TCGCCAGCAT TGTGAGAGCG AAAAGCTGTT GCTATATGAT ACAGTCCAGA
541GTGAACTAGA GGAGAAGATA AGAAGGCTTG AAGAGGATAG GCACAGCATT GATATTACCT
601CAGAGCTGTG GAATGATGAG CTTCAGTCAA GAAAAAAGAG GAAGGATCCT TTCAGTCCTG
661ACAAAAAGAA GCCAGTTGTT GTTTCAGGTC CATATATAGT TTATATGCTA CAAGATCTTG
721ATATTCTTGA AGACTGGACA ACAATTAGGA AGGCAATGGC TACATTGGGG CCACACAGAG
781TGAAAACGGA ACCACCTGTG AAACTGGAAA AACATCTGCA CAGTGCTAGA TCTGAAGAGG
841GAAGACTATA TTATGATGGT GAATGGTATA TACGTGGACA AACAATATGT ATTGATAAAA
901AAGATGAATG TCCTACAAGT GCTGTAATTA CAACAATTAA CCATGATGAA GTTTGGTTTA
961AGAGGCCTGA TGGAAGCAAA TCTAAGCTTT ACATTTCACA GCTACAGAAA GGAAAATATT
1021CAATTAAACA TTCATACCAA CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt
1081atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)