Construct: ORF ccsbBroadEn_04444
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017135.1_s300c1, BRDN0000395194
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF341 (84905)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84905 | ZNF341 | zinc finger protein 341 | NM_032819.4 | 100% | 100% | |
| 2 | human | 84905 | ZNF341 | zinc finger protein 341 | NM_001282933.2 | 99.1% | 99.1% | 914_934del |
| 3 | human | 84905 | ZNF341 | zinc finger protein 341 | NM_001282935.1 | 88.6% | 85.7% | 0_1ins73;68_69ins197;644_664del |
| 4 | human | 84905 | ZNF341 | zinc finger protein 341 | XR_001754424.2 | 81.9% | (many diffs) | |
| 5 | human | 84905 | ZNF341 | zinc finger protein 341 | NR_104259.1 | 67.9% | (many diffs) | |
| 6 | human | 84905 | ZNF341 | zinc finger protein 341 | XR_002958536.1 | 66.7% | 1_365del;1966_1967ins97;2810_3564del | |
| 7 | mouse | 228807 | Zfp341 | zinc finger protein 341 | NM_199304.1 | 85.7% | 88.7% | (many diffs) |
| 8 | mouse | 228807 | Zfp341 | zinc finger protein 341 | XM_011239488.2 | 84.7% | 87.6% | (many diffs) |
| 9 | mouse | 228807 | Zfp341 | zinc finger protein 341 | XR_374456.3 | 64.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2610
- ORF length:
- 2541
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCGCAGGCG ATCTTTGAGG CCCTGGAGGG AATGGACAAT CAGACCGTTC 121 TGGCTGTCCA GTCATTATTG GATGGCCAAG GAGCAGTCCC TGATCCGACA GGCCAGAGTG 181 TCAATGCGCC CCCTGCTATC CAGCCATTGG ATGACGAGGA TGTATTTCTC TGCGGGAAGT 241 GTAAGAAGCA ATTCAACTCG CTGCCAGCGT TTATGACCCA CAAGCGGGAA CAGTGCCAGG 301 GGAATGCCCC CGCCCTGGCC ACAGTCTCAC TGGCCACCAA CAGCATCTAC CCACCTTCGG 361 CAGCACCCAC AGCGGTCCAG CAGGCCCCAA CTCCTGCCAA TCGCCAGATC TCCACATACA 421 TCACAGTGCC CCCGTCCCCA CTGATCCAGA CCCTGGTGCA GGGGAACATC TTGGTGAGCG 481 ATGATGTGCT CATGTCTGCC ATGTCAGCCT TCACATCCCT GGACCAGCCC ATGCCCCAGG 541 GCCCCCCACC TGTGCAGAGC AGCCTGAACA TGCATTCCGT GCCCAGCTAC CTCACCCAGC 601 CTCCACCTCC TCCTCCACCT CCTCCACCAC TGCCCCCACC GCCACCACCT CAGCCTCCAC 661 CACCTCCACC CCAGAGCCTG GGCCCCCCTG GGCGTCCCAA CCCTGGTGGG AACGGTGTGG 721 TGGAGGTGTA CAGTGCTGCT GCGCCCCTGG CTGGGAGTGG AACGGTGGAG ATCCAGGCAC 781 TGGGGATGCA GCCCTACCCA CCCCTAGAGG TGCCAAACCA GTGTGTGGAG CCTCCAGTAT 841 ATCCCACCCC CACAGTGTAC AGCCCTGGCA AACAGGGATT CAAACCCAAA GGACCAAACC 901 CCGCCGCCCC CATGACCAGC GCCACCGGGG GCACGGTGGC CACCTTTGAC TCTCCAGCAA 961 CGCTGAAGAC CCGACGAGCT AAAGCTGCAG GGAAGCCAAA GGCTCAGAAA CTCAAGTGCT 1021 CATACTGTGA CAAGTCATTC ACCAAAAACT TTGACCTGCA GCAGCACATC CGAAGCCACA 1081 CCGGTGAGAA GCCCTTCCAG TGCATTGCAT GTGGCCGTGC CTTTGCCCAG AAGTCTAATG 1141 TTAAGAAACA CATGCAGACC CACAAGGTGT GGCCTCCAGG ACACAGTGGT GGCACCGTGT 1201 CTCGAAACTC TGTGACCGTA CAGGTCATGG CCCTGAACCC CAGCAGGCAG GAGGACGAGG 1261 AAAGCACAGG GTTGGGCCAG CCCCTGCCGG GTGCGCCACA GCCCCAGGCC TTGTCCACAG 1321 CTGGTGAGGA AGAGGGGGAC AAGCCGGAGT CCAAGCAGGT GGTCCTCATC GACAGCTCCT 1381 ACCTGTGCCA ATTCTGCCCC AGCAAATTCA GCACCTACTT CCAGCTCAAG TCTCACATGA 1441 CCCAGCATAA GAATGAGCAG GTGTACAAGT GTGTGGTCAA AAGCTGTGCC CAGACGTTCC 1501 CAAAGCTCGA CACATTTCTG GAGCACATCA AGAGCCACCA GGAGGAGCTG AGCTACCGCT 1561 GCCACCTCTG CGGCAAGGAC TTCCCCTCGC TGTACGACCT GGGCGTGCAC CAGTACTCCC 1621 ACAGCCTCCT GCCACAGCAC AGCCCCAAGA AGGACAATGC CGTCTACAAG TGTGTCAAAT 1681 GTGTCAACAA ATACTCCACC CCTGAGGCCC TGGAGCACCA CCTGCAGACC GCCACTCACA 1741 ACTTCCCCTG CCCACACTGC CAGAAGGTGT TTCCTTGTGA ACGCTACCTG CGGCGTCATC 1801 TGCCCACCCA CGGCAGCGGG GGCAGGTTCA AGTGCCAAGT GTGCAAGAAG TTCTTCCGGC 1861 GGGAGCATTA TCTCAAACTG CATGCTCACA TCCACTCGGG TGAGAAGCCC TACAAATGCT 1921 CAGTGTGCGA GTCTGCGTTC AACCGCAAGG ACAAACTGAA GAGACACATG TTGATCCACG 1981 AGCCCTTCAA GAAATACAAA TGCCCTTTCT CGACGCACAC AGGCTGCAGT AAGGAGTTCA 2041 ACCGGCCGGA CAAGCTGAAG GCCCACATCC TCTCCCACTC TGGCATGAAG CTCCACAAAT 2101 GCGCCCTGTG CAGCAAGTCC TTCAGCCGCC GTGCCCACCT CGCCGAGCAT CAGCGCGCCC 2161 ACACGGGCAA CTACAAGTTC CGCTGTGCTG GCTGCGCCAA GGGCTTTTCC CGCCACAAAT 2221 ACCTCAAAGA TCACCGCTGT CGTCTCGGCC CCCAAAAGGA CAAGGACCTG CAAACCCGGC 2281 GGCCCCCCCA GAGGAGGGCA GCCCCCCGCA GTTGCGGCAG TGGTGGGCGC AAGGTGCTGA 2341 CCCCCTTGCC TGACCCGCTG GGGCTGGAGG AGCTGAAGGA CACAGGGGCT GGGCTGGTGC 2401 CCGAGGCTGT CCCCGGCAAG CCGCCCTTCG CAGAGCCGGA CGCGGTGCTG TCCATCGTTG 2461 TGGGTGGTGC GGTGGGCGCG GAAACTGAGC TGGTGGTACC TGGACACGCT GAGGGGCTGG 2521 GCTCCAACCT GGCTCTGGCG GAGCTGCAGG CTGGGGCCGA GGGCCCATGT GCCATGCTCG 2581 CTGTGCCCGT CTACATCCAG GCCTCCGAGT TGCCAACTTT CTTGTACAAA GTtggcatta 2641 taagaaagca ttgcttatca atttgttgca acgaac