Transcript: Mouse NM_199304.1

Mus musculus zinc finger protein 341 (Zfp341), mRNA.

Source:
NCBI, updated 2015-02-15
Taxon:
Mus musculus (mouse)
Gene:
Zfp341 (228807)
Length:
3247
CDS:
5..2545

Additional Resources:

NCBI RefSeq record:
NM_199304.1
NBCI Gene record:
Zfp341 (228807)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_199304.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000081742 GTCCCACATGATTCAGCACAA pLKO.1 1378 CDS 100% 4.050 5.670 N Zfp341 n/a
2 TRCN0000081741 CGACACAAATACCTCAAGGAT pLKO.1 2159 CDS 100% 3.000 4.200 N Zfp341 n/a
3 TRCN0000413094 GATTCCTCAGACGACTGTATG pLKO_005 2927 3UTR 100% 10.800 8.640 N Zfp341 n/a
4 TRCN0000429338 ATGCATCCTGTGCCCAATTAC pLKO_005 506 CDS 100% 13.200 9.240 N Zfp341 n/a
5 TRCN0000081740 CCCACAGGACAAAGTGTAAAT pLKO.1 101 CDS 100% 13.200 9.240 N Zfp341 n/a
6 TRCN0000081738 GCTGGAGTCCTTGTGTGTTAA pLKO.1 2890 3UTR 100% 13.200 9.240 N Zfp341 n/a
7 TRCN0000435037 TGGTACTTGGGCATCCTTTAA pLKO_005 2782 3UTR 100% 13.200 9.240 N Zfp341 n/a
8 TRCN0000415758 CAGAGTAACCAGGCTAGACTT pLKO_005 2538 CDS 100% 4.950 3.465 N Zfp341 n/a
9 TRCN0000081739 CCATCTCTGTAGCAAGGACTT pLKO.1 1510 CDS 100% 4.050 2.835 N Zfp341 n/a
10 TRCN0000447341 TCGACAGCTCTTACCTGTGTC pLKO_005 1317 CDS 100% 4.050 2.835 N Zfp341 n/a
11 TRCN0000233223 CCGTCTACAAGTGTGTCAAAT pLKO_005 1608 CDS 100% 13.200 9.240 N ZNF341 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_199304.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12880 pDONR223 100% 86.4% 89.4% None (many diffs) n/a
2 ccsbBroad304_12880 pLX_304 0% 86.4% 89.4% V5 (many diffs) n/a
3 TRCN0000471153 TTCCAGGATAGGGGCGCACGCTCC pLX_317 18.6% 86.4% 89.4% V5 (many diffs) n/a
4 ccsbBroadEn_04444 pDONR223 100% 85.7% 88.7% None (many diffs) n/a
5 ccsbBroad304_04444 pLX_304 0% 85.7% 88.7% V5 (many diffs) n/a
6 TRCN0000474267 CAACGTCACTCACGCCATCTTTTC pLX_317 8.8% 85.7% 88.7% V5 (many diffs) n/a
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