Transcript: Human XR_002958536.1

PREDICTED: Homo sapiens zinc finger protein 341 (ZNF341), transcript variant X1, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNF341 (84905)
Length:
3564
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002958536.1
NBCI Gene record:
ZNF341 (84905)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002958536.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000233221 TGAAGACCCGACGAGCTAAAG pLKO_005 1261 3UTR 100% 10.800 15.120 N ZNF341 n/a
2 TRCN0000150341 CCATAAACTCTTCGGAGTTTA pLKO.1 3215 3UTR 100% 1.320 1.848 N ZNF341 n/a
3 TRCN0000152506 GCCATAAACTCTTCGGAGTTT pLKO.1 3214 3UTR 100% 0.495 0.693 N ZNF341 n/a
4 TRCN0000233224 CATCGAGCCATTGGCAGAAAT pLKO_005 2911 3UTR 100% 13.200 9.240 N ZNF341 n/a
5 TRCN0000233220 GTGTGGAGCCTCCAGTATATC pLKO_005 1120 3UTR 100% 13.200 9.240 N ZNF341 n/a
6 TRCN0000233222 TTCCCAAAGCTCGACACATTT pLKO_005 1794 3UTR 100% 13.200 9.240 N ZNF341 n/a
7 TRCN0000155623 CCTGGCAAACAGGGATTCAAA pLKO.1 1161 3UTR 100% 5.625 3.938 N ZNF341 n/a
8 TRCN0000154413 GCGGGAAGTGTAAGAAGCAAT pLKO.1 529 3UTR 100% 4.950 3.465 N ZNF341 n/a
9 TRCN0000155740 CAAGAAGGACAATGCCGTCTA pLKO.1 1943 3UTR 100% 4.050 2.430 N ZNF341 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002958536.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04444 pDONR223 100% 66.7% None 1_365del;1966_1967ins97;2810_3564del n/a
2 ccsbBroad304_04444 pLX_304 0% 66.7% V5 1_365del;1966_1967ins97;2810_3564del n/a
3 TRCN0000474267 CAACGTCACTCACGCCATCTTTTC pLX_317 8.8% 66.7% V5 1_365del;1966_1967ins97;2810_3564del n/a
4 ccsbBroadEn_12880 pDONR223 100% 66.3% None (many diffs) n/a
5 ccsbBroad304_12880 pLX_304 0% 66.3% V5 (many diffs) n/a
6 TRCN0000471153 TTCCAGGATAGGGGCGCACGCTCC pLX_317 18.6% 66.3% V5 (many diffs) n/a
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