Construct: ORF ccsbBroadEn_04450

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001472.1_s300c1, BRDN0000387366
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNRF1 (84937)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84937 ZNRF1 zinc and ring finger 1 NM_032268.5 100% 100%
2 human 84937 ZNRF1 zinc and ring finger 1 XM_017023793.1 100% 100%
3 human 84937 ZNRF1 zinc and ring finger 1 XM_017023794.1 72.3% 64.6% (many diffs)
4 human 84937 ZNRF1 zinc and ring finger 1 XM_011523392.1 62.4% 62.5% 426_426delAins256
5 mouse 170737 Znrf1 zinc and ring finger 1 NM_001168621.1 95% 99.1% (many diffs)
6 mouse 170737 Znrf1 zinc and ring finger 1 NM_133206.3 95% 99.1% (many diffs)
7 mouse 170737 Znrf1 zinc and ring finger 1 XM_006530731.2 95% 99.1% (many diffs)
8 mouse 170737 Znrf1 zinc and ring finger 1 NM_001168622.1 81.9% 85% (many diffs)
9 mouse 170737 Znrf1 zinc and ring finger 1 XM_011248322.2 66.3% 63.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
747
ORF length:
681
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG GGGCAAGCAG AGCACGGCGG CCCGCTCCCG GGGCCCCTTC CCGGGGGTCT
121CCACCGATGA CAGCGCCGTG CCGCCGCCGG GAGGGGCGCC CCATTTCGGG CACTACCGGA
181CGGGCGGCGG GGCCATGGGG CTGCGCAGCC GCTCGGTCAG CTCGGTGGCA GGCATGGGCA
241TGGACCCCAG CACGGCCGGG GGGGTGCCCT TTGGCCTCTA CACCCCCGCC TCCCGGGGCA
301CCGGCGACTC CGAGAGGGCG CCCGGCGGCG GAGGGTCTGC GTCCGACTCC ACCTATGCCC
361ATGGCAATGG TTACCAGGAG ACGGGCGGCG GTCACCATAG AGACGGGATG CTGTACCTGG
421GCTCCCGAGC CTCGCTGGCG GATGCTCTAC CTCTGCACAT CGCACCCAGG TGGTTCAGCT
481CGCATAGTGG TTTCAAGTGC CCCATTTGCT CCAAGTCTGT GGCTTCTGAC GAGATGGAAA
541TGCACTTTAT AATGTGTTTG AGCAAACCTC GCCTCTCCTA CAACGATGAT GTGCTGACTA
601AAGACGCGGG TGAGTGTGTG ATCTGCCTGG AGGAGCTGCT GCAGGGGGAC ACGATAGCCA
661GGCTGCCCTG CCTGTGCATC TATCACAAAA GCTGCATAGA CTCGTGGTTT GAAGTGAACA
721GATCTTGTCC GGAACACCCT GCGGACTGCC CAACTTTCTT GTACAAAGTt ggcattataa
781gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)