Transcript: Human XM_011523392.1

PREDICTED: Homo sapiens zinc and ring finger 1 (ZNRF1), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNRF1 (84937)
Length:
1153
CDS:
630..1058

Additional Resources:

NCBI RefSeq record:
XM_011523392.1
NBCI Gene record:
ZNRF1 (84937)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011523392.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000303362 TATGCCCATGGCAATGGTTAC pLKO_005 918 CDS 100% 6.000 4.200 N ZNRF1 n/a
2 TRCN0000040747 CGGTCACCATAGAGACGGGAT pLKO.1 953 CDS 100% 0.720 0.504 N Znrf1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011523392.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04450 pDONR223 100% 62.4% 62.5% None 426_426delAins256 n/a
2 ccsbBroad304_04450 pLX_304 0% 62.4% 62.5% V5 426_426delAins256 n/a
3 TRCN0000479058 GGGCAGGTCATACCACCGTCCTCA pLX_317 57.6% 62.4% 62.5% V5 426_426delAins256 n/a
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