Transcript: Mouse NM_001168622.1

Mus musculus zinc and ring finger 1 (Znrf1), transcript variant 3, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Znrf1 (170737)
Length:
5466
CDS:
502..1089

Additional Resources:

NCBI RefSeq record:
NM_001168622.1
NBCI Gene record:
Znrf1 (170737)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001168622.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000040743 CATGGTTTGAAGTGAACAGAT pLKO.1 1043 CDS 100% 4.950 3.465 N Znrf1 n/a
2 TRCN0000040746 TGCCTGTGCATCTATCACAAA pLKO.1 1009 CDS 100% 4.950 3.465 N Znrf1 n/a
3 TRCN0000040747 CGGTCACCATAGAGACGGGAT pLKO.1 825 CDS 100% 0.720 0.360 Y Znrf1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001168622.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04450 pDONR223 100% 81.9% 85% None (many diffs) n/a
2 ccsbBroad304_04450 pLX_304 0% 81.9% 85% V5 (many diffs) n/a
3 TRCN0000479058 GGGCAGGTCATACCACCGTCCTCA pLX_317 57.6% 81.9% 85% V5 (many diffs) n/a
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