Construct: ORF ccsbBroadEn_04504
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011018.1_s300c1, BRDN0000391776
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC120 (90060)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 90060 | CCDC120 | coiled-coil domain containi... | NM_001271835.1 | 100% | 100% | |
| 2 | human | 90060 | CCDC120 | coiled-coil domain containi... | NM_001271836.2 | 100% | 100% | |
| 3 | human | 90060 | CCDC120 | coiled-coil domain containi... | NM_033626.3 | 100% | 100% | |
| 4 | human | 90060 | CCDC120 | coiled-coil domain containi... | NM_001163323.3 | 98% | 98% | 11_12ins36 |
| 5 | human | 90060 | CCDC120 | coiled-coil domain containi... | NM_001163322.2 | 93.2% | 92.8% | (many diffs) |
| 6 | human | 90060 | CCDC120 | coiled-coil domain containi... | NM_001163321.3 | 90.2% | 89.9% | (many diffs) |
| 7 | mouse | 54648 | Ccdc120 | coiled-coil domain containi... | NM_207202.2 | 85.6% | 89.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1956
- ORF length:
- 1890
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA AGTCAAAGGT CAGCTGATCA GCTCTCCTAC CTTCAATGCC CCAGCTGCCC 121 TGTTCGGAGA GGCTGCCCCC CAGGTGAAGT CAGAGCGTCT GCGGGGGCTG CTTGACCGGC 181 AGCGGACCCT GCAGGAGGCC CTGAGCCTGA AACTTCAGGA GCTCCGCAAA GTGTGTCTCC 241 AGGAGGCGGA GCTGACTGGC CAGCTGCCCC CTGAGTGCCC ACTAGAGCCT GGTGAACGGC 301 CCCAGTTGGT CCGCCGGCGG CCCCCCACAG CCCGCGCCTA CCCTCCACCG CACCCCAACC 361 AAGCACACCA CTCCTTGTGC CCTGCTGAGG AGCTGGCTCT TGAGGCCCTG GAACGCGAGG 421 TGTCAGTGCA ACAGCAGATC GCGGCGGCCG CCCGCCGCCT GGCCTTGGCC CCTGATCTGA 481 GCACCGAGCA GCGCCGGCGC CGGCGCCAGG TCCAGGCAGA TGCACTGAGG AGGCTGCATG 541 AGCTAGAGGA GCAGCTCAGG GATGTCCGGG CCCGCCTTGG CCTCCCAGTG CTCCCGCTGC 601 CCCAGCCACT GCCACTGTCC ACGGGGTCAG TGATCACCAC CCAGGGAGTC TGCCTGGGCA 661 TGCGTCTTGC TCAGCTCAGC CAAGAGGACG TAGTTCTGCA CTCAGAGAGC AGCTCCCTCT 721 CAGAGTCTGG GGCCAGCCAT GACAACGAGG AGCCCCATGG CTGCTTCTCT CTGGCCGAGC 781 GCCCCTCACC ACCCAAGGCT TGGGACCAGC TGCGGGCAGT ATCTGGGGGG AGCCCTGAGC 841 GGCGAACCCC ATGGAAACCA CCTCCATCAG ATCTTTATGG GGATCTGAAG AGCCGGCGGA 901 ACTCTGTGGC CAGCCCCACC AGCCCCACAC GCTCGCTGCC CAGGAGTGCC TCCAGTTTTG 961 AGGGGCGAAG TGTGCCTGCC ACCCCTGTCC TCACCCGGGG CGCTGGCCCC CAGCTCTGCA 1021 AACCTGAAGG CCTTCATTCT CGTCAGTGGT CCGGCAGCCA GGACTCCCAG ATGGGCTTCC 1081 CCCGGGCGGA CCCTGCCTCC GATCGCGCCT CCCTCTTCGT AGCTCGCACC CGCCGCAGCA 1141 ACAGTTCTGA GGCCCTGCTG GTGGACCGGG CCGCTGGTGG GGGAGCTGGC TCCCCGCCTG 1201 CCCCTCTGGC TCCCTCTGCC TCTGGCCCCC CAGTCTGCAA GAGCAGTGAG GTGCTGTATG 1261 AGCGCCCCCA ACCAACCCCT GCCTTCTCCT CCCGCACAGC AGGCCCCCCA GACCCTCCCC 1321 GGGCCGCCCG GCCTAGCTCA GCTGCCCCTG CCTCCCGAGG TGCCCCCCGG CTCCCACCTG 1381 TGTGTGGAGA CTTCCTCTTG GACTATTCCT TGGACCGGGG CCTGCCCCGC AGTGGCGGTG 1441 GAACAGGCTG GGGGGAGCTG CCGCCTGCAG CTGAGGTCCC AGGACCCCTC TCCCGCCGGG 1501 ATGGGCTCCT CACCATGCTC CCCGGCCCAC CACCTGTGTA TGCAGCTGAC AGCAACAGCC 1561 CCCTCCTCCG CACCAAGGAC CCCCACACCC GTGCCACCCG CACTAAGCCC TGTGGCCTGC 1621 CCCCAGAGGC TGCCGAAGGC CCTGAGGTGC ATCCAAACCC TCTGCTGTGG ATGCCCCCAC 1681 CCACCCGTAT CCCCTCGGCT GGTGAACGCA GTGGCCACAA GAACCTGGCT CTGGAGGGGC 1741 TGCGGGACTG GTACATCCGG AACTCGGGAC TGGCTGCGGG GCCCCAGCGC CGGCCTGTGC 1801 TCCCTTCCGT GGGCCCGCCA CACCCACCCT TCCTCCATGC CCGCTGCTAT GAGGTGGGCC 1861 AGGCGCTGTA CGGGGCCCCC AGCCAGGCGC CACTCCCACA CTCGAGGAGT TTCACGGCGC 1921 CCCCTGTCTC TGGCAGGTAT GGGGGGTGCT TTTACTGCCC AACTTTCTTG TACAAAGTtg 1981 gcattataag aaagcattgc ttatcaattt gttgcaacga ac