Construct: ORF ccsbBroadEn_04504

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011018.1_s300c1, BRDN0000391776
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CCDC120 (90060)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 90060 CCDC120 coiled-coil domain containi... NM_001271835.1 100% 100%
2 human 90060 CCDC120 coiled-coil domain containi... NM_001271836.2 100% 100%
3 human 90060 CCDC120 coiled-coil domain containi... NM_033626.3 100% 100%
4 human 90060 CCDC120 coiled-coil domain containi... NM_001163323.3 98% 98% 11_12ins36
5 human 90060 CCDC120 coiled-coil domain containi... NM_001163322.2 93.2% 92.8% (many diffs)
6 human 90060 CCDC120 coiled-coil domain containi... NM_001163321.3 90.2% 89.9% (many diffs)
7 mouse 54648 Ccdc120 coiled-coil domain containi... NM_207202.2 85.6% 89.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1956
ORF length:
1890
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA AGTCAAAGGT CAGCTGATCA GCTCTCCTAC CTTCAATGCC CCAGCTGCCC
121TGTTCGGAGA GGCTGCCCCC CAGGTGAAGT CAGAGCGTCT GCGGGGGCTG CTTGACCGGC
181AGCGGACCCT GCAGGAGGCC CTGAGCCTGA AACTTCAGGA GCTCCGCAAA GTGTGTCTCC
241AGGAGGCGGA GCTGACTGGC CAGCTGCCCC CTGAGTGCCC ACTAGAGCCT GGTGAACGGC
301CCCAGTTGGT CCGCCGGCGG CCCCCCACAG CCCGCGCCTA CCCTCCACCG CACCCCAACC
361AAGCACACCA CTCCTTGTGC CCTGCTGAGG AGCTGGCTCT TGAGGCCCTG GAACGCGAGG
421TGTCAGTGCA ACAGCAGATC GCGGCGGCCG CCCGCCGCCT GGCCTTGGCC CCTGATCTGA
481GCACCGAGCA GCGCCGGCGC CGGCGCCAGG TCCAGGCAGA TGCACTGAGG AGGCTGCATG
541AGCTAGAGGA GCAGCTCAGG GATGTCCGGG CCCGCCTTGG CCTCCCAGTG CTCCCGCTGC
601CCCAGCCACT GCCACTGTCC ACGGGGTCAG TGATCACCAC CCAGGGAGTC TGCCTGGGCA
661TGCGTCTTGC TCAGCTCAGC CAAGAGGACG TAGTTCTGCA CTCAGAGAGC AGCTCCCTCT
721CAGAGTCTGG GGCCAGCCAT GACAACGAGG AGCCCCATGG CTGCTTCTCT CTGGCCGAGC
781GCCCCTCACC ACCCAAGGCT TGGGACCAGC TGCGGGCAGT ATCTGGGGGG AGCCCTGAGC
841GGCGAACCCC ATGGAAACCA CCTCCATCAG ATCTTTATGG GGATCTGAAG AGCCGGCGGA
901ACTCTGTGGC CAGCCCCACC AGCCCCACAC GCTCGCTGCC CAGGAGTGCC TCCAGTTTTG
961AGGGGCGAAG TGTGCCTGCC ACCCCTGTCC TCACCCGGGG CGCTGGCCCC CAGCTCTGCA
1021AACCTGAAGG CCTTCATTCT CGTCAGTGGT CCGGCAGCCA GGACTCCCAG ATGGGCTTCC
1081CCCGGGCGGA CCCTGCCTCC GATCGCGCCT CCCTCTTCGT AGCTCGCACC CGCCGCAGCA
1141ACAGTTCTGA GGCCCTGCTG GTGGACCGGG CCGCTGGTGG GGGAGCTGGC TCCCCGCCTG
1201CCCCTCTGGC TCCCTCTGCC TCTGGCCCCC CAGTCTGCAA GAGCAGTGAG GTGCTGTATG
1261AGCGCCCCCA ACCAACCCCT GCCTTCTCCT CCCGCACAGC AGGCCCCCCA GACCCTCCCC
1321GGGCCGCCCG GCCTAGCTCA GCTGCCCCTG CCTCCCGAGG TGCCCCCCGG CTCCCACCTG
1381TGTGTGGAGA CTTCCTCTTG GACTATTCCT TGGACCGGGG CCTGCCCCGC AGTGGCGGTG
1441GAACAGGCTG GGGGGAGCTG CCGCCTGCAG CTGAGGTCCC AGGACCCCTC TCCCGCCGGG
1501ATGGGCTCCT CACCATGCTC CCCGGCCCAC CACCTGTGTA TGCAGCTGAC AGCAACAGCC
1561CCCTCCTCCG CACCAAGGAC CCCCACACCC GTGCCACCCG CACTAAGCCC TGTGGCCTGC
1621CCCCAGAGGC TGCCGAAGGC CCTGAGGTGC ATCCAAACCC TCTGCTGTGG ATGCCCCCAC
1681CCACCCGTAT CCCCTCGGCT GGTGAACGCA GTGGCCACAA GAACCTGGCT CTGGAGGGGC
1741TGCGGGACTG GTACATCCGG AACTCGGGAC TGGCTGCGGG GCCCCAGCGC CGGCCTGTGC
1801TCCCTTCCGT GGGCCCGCCA CACCCACCCT TCCTCCATGC CCGCTGCTAT GAGGTGGGCC
1861AGGCGCTGTA CGGGGCCCCC AGCCAGGCGC CACTCCCACA CTCGAGGAGT TTCACGGCGC
1921CCCCTGTCTC TGGCAGGTAT GGGGGGTGCT TTTACTGCCC AACTTTCTTG TACAAAGTtg
1981gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)