Construct: ORF ccsbBroadEn_04540
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009428.1_s300c1, BRDN0000392018
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CDKN2AIPNL (91368)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 91368 | CDKN2AIPNL | CDKN2A interacting protein ... | NM_080656.3 | 100% | 100% | |
| 2 | human | 91368 | CDKN2AIPNL | CDKN2A interacting protein ... | XM_011543709.2 | 61.1% | 57.9% | (many diffs) |
| 3 | mouse | 52626 | Cdkn2aipnl | CDKN2A interacting protein ... | NM_029976.3 | 89.3% | 96.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 414
- ORF length:
- 348
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT CGGTGGCGAG GCGGCTGCCG CAGTGGAGGA GCTGGTTTCG GGGGTGCGGC 121 AGGCGGCCGA CTTCGCGGAG CAGTTCCGCT CCTACTCAGA GAGCGAGAAG CAATGGAAGG 181 CCCGCATGGA ATTCATCCTG CGCCACCTGC CCGACTACCG CGACCCGCCC GACGGCAGTG 241 GCCGCCTGGA CCAGCTGCTC TCCCTCTCCA TGGTCTGGGC CAACCATCTC TTCCTAGGCT 301 GCAGTTACAA TAAAGACCTT TTAGACAAGG TGATGGAAAT GGCCGATGGG ATTGAAGTGG 361 AAGACCTGCC ACAATTTACT ACCAGAAGTG AATTAATGAA AAAGCATCAA AGCTACCCAA 421 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac