Construct: ORF ccsbBroadEn_04689
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010605.1_s300c1, BRDN0000388951
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CTHRC1 (115908)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 115908 | CTHRC1 | collagen triple helix repea... | NM_138455.4 | 99.8% | 100% | 648T>C |
| 2 | human | 115908 | CTHRC1 | collagen triple helix repea... | NM_001256099.2 | 87.5% | 83.5% | (many diffs) |
| 3 | human | 115908 | CTHRC1 | collagen triple helix repea... | XM_011516824.2 | 55.5% | 51.8% | 371_372ins217;405_406ins107 |
| 4 | mouse | 68588 | Cthrc1 | collagen triple helix repea... | NM_026778.2 | 87.5% | 93.8% | (many diffs) |
| 5 | mouse | 68588 | Cthrc1 | collagen triple helix repea... | XM_006521318.2 | 60.4% | 63.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 795
- ORF length:
- 729
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCG ACCCCAGGGC CCCGCCGCCT CCCCGCAGCG GCTCCGCGGC CTCCTGCTGC 121 TCCTGCTGCT GCAGCTGCCC GCGCCGTCGA GCGCCTCTGA GATCCCCAAG GGGAAGCAAA 181 AGGCGCAGCT CCGGCAGAGG GAGGTGGTGG ACCTGTATAA TGGAATGTGC TTACAAGGGC 241 CAGCAGGAGT GCCTGGTCGA GACGGGAGCC CTGGGGCCAA TGGCATTCCG GGTACACCTG 301 GGATCCCAGG TCGGGATGGA TTCAAAGGAG AAAAGGGGGA ATGTCTGAGG GAAAGCTTTG 361 AGGAGTCCTG GACACCCAAC TACAAGCAGT GTTCATGGAG TTCATTGAAT TATGGCATAG 421 ATCTTGGGAA AATTGCGGAG TGTACATTTA CAAAGATGCG TTCAAATAGT GCTCTAAGAG 481 TTTTGTTCAG TGGCTCACTT CGGCTAAAAT GCAGAAATGC ATGCTGTCAG CGTTGGTATT 541 TCACATTCAA TGGAGCTGAA TGTTCAGGAC CTCTTCCCAT TGAAGCTATA ATTTATTTGG 601 ACCAAGGAAG CCCTGAAATG AATTCAACAA TTAATATTCA TCGCACTTCT TCTGTGGAAG 661 GACTTTGTGA AGGAATTGGT GCTGGATTAG TGGATGTTGC TATCTGGGTT GGCACTTGTT 721 CAGATTACCC AAAAGGAGAT GCTTCTACTG GATGGAATTC AGTTTCTCGC ATCATTATTG 781 AAGAACTACC AAAATACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 841 tatcaatttg ttgcaacgaa c