Construct: ORF ccsbBroadEn_04694
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007164.1_s300c1, BRDN0000386862
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRRC3B (116135)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 116135 | LRRC3B | leucine rich repeat contain... | NM_001317808.1 | 100% | 100% | |
| 2 | human | 116135 | LRRC3B | leucine rich repeat contain... | NM_001317809.1 | 100% | 100% | |
| 3 | human | 116135 | LRRC3B | leucine rich repeat contain... | NM_001317810.1 | 100% | 100% | |
| 4 | human | 116135 | LRRC3B | leucine rich repeat contain... | NM_001317811.1 | 100% | 100% | |
| 5 | human | 116135 | LRRC3B | leucine rich repeat contain... | NM_052953.3 | 100% | 100% | |
| 6 | human | 116135 | LRRC3B | leucine rich repeat contain... | XM_005264849.3 | 100% | 100% | |
| 7 | human | 116135 | LRRC3B | leucine rich repeat contain... | XM_005264850.4 | 100% | 100% | |
| 8 | human | 116135 | LRRC3B | leucine rich repeat contain... | XM_011533332.3 | 100% | 100% | |
| 9 | human | 116135 | LRRC3B | leucine rich repeat contain... | XM_017005675.1 | 100% | 100% | |
| 10 | human | 116135 | LRRC3B | leucine rich repeat contain... | XR_001739998.1 | 11.9% | 1_1635del;2413_6512del | |
| 11 | human | 116135 | LRRC3B | leucine rich repeat contain... | XR_001739999.1 | 10.8% | 1_1635del;2413_7171del | |
| 12 | human | 116135 | LRRC3B | leucine rich repeat contain... | XR_001739997.1 | 10.1% | 1_1635del;2413_7629del | |
| 13 | mouse | 218763 | Lrrc3b | leucine rich repeat contain... | NM_146052.4 | 90.3% | 99.6% | (many diffs) |
| 14 | mouse | 218763 | Lrrc3b | leucine rich repeat contain... | XM_006518005.2 | 90.3% | 99.6% | (many diffs) |
| 15 | mouse | 218763 | Lrrc3b | leucine rich repeat contain... | XM_006518006.1 | 90.3% | 99.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 843
- ORF length:
- 777
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA TCTGGTAGAC CTGTGGTTAA CCCGTTCCCT CTCCATGTGT CTCCTCCTAC 121 AAAGTTTTGT TCTTATGATA CTGTGCTTTC ATTCTGCCAG TATGTGTCCC AAGGGCTGTC 181 TTTGTTCTTC CTCTGGGGGT TTAAATGTCA CCTGTAGCAA TGCAAATCTC AAGGAAATAC 241 CTAGAGATCT TCCTCCTGAA ACAGTCTTAC TGTATCTGGA CTCCAATCAG ATCACATCTA 301 TTCCCAATGA AATTTTTAAG GACCTCCATC AACTGAGAGT TCTCAACCTG TCCAAAAATG 361 GCATTGAGTT TATCGATGAG CATGCCTTCA AAGGAGTAGC TGAAACCTTG CAGACTCTGG 421 ACTTGTCCGA CAATCGGATT CAAAGTGTGC ACAAAAATGC CTTCAATAAC CTGAAGGCCA 481 GGGCCAGAAT TGCCAACAAC CCCTGGCACT GCGACTGTAC TCTACAGCAA GTTCTGAGGA 541 GCATGGCGTC CAATCATGAG ACAGCCCACA ACGTGATCTG TAAAACGTCC GTGTTGGATG 601 AACATGCTGG CAGACCATTC CTCAATGCTG CCAACGACGC TGACCTTTGT AACCTCCCTA 661 AAAAAACTAC CGATTATGCC ATGCTGGTCA CCATGTTTGG CTGGTTCACT ATGGTGATCT 721 CATATGTGGT ATATTATGTG AGGCAAAATC AGGAGGATGC CCGGAGACAC CTCGAATACT 781 TGAAATCCCT GCCAAGCAGG CAGAAGAAAG CAGATGAACC TGATGATATT AGCACTGTGG 841 TATACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 901 gcaacgaac