Construct: ORF ccsbBroadEn_04816
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013967.1_s300c1, BRDN0000396504
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C19orf47 (126526)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 126526 | C19orf47 | chromosome 19 open reading ... | NM_001256441.2 | 92.2% | 92.2% | 1_90del |
| 2 | human | 126526 | C19orf47 | chromosome 19 open reading ... | XM_024451365.1 | 92.2% | 92.2% | 1_90del |
| 3 | human | 126526 | C19orf47 | chromosome 19 open reading ... | XM_024451366.1 | 92.2% | 92.2% | 1_90del |
| 4 | human | 126526 | C19orf47 | chromosome 19 open reading ... | XM_017026291.1 | 91.9% | 91.9% | 1_90del;438_439insGCA |
| 5 | human | 126526 | C19orf47 | chromosome 19 open reading ... | XM_024451368.1 | 90% | 87.7% | (many diffs) |
| 6 | human | 126526 | C19orf47 | chromosome 19 open reading ... | XM_017026294.1 | 87.3% | 87.3% | 0_1ins135 |
| 7 | human | 126526 | C19orf47 | chromosome 19 open reading ... | NM_001256440.1 | 84.1% | 84.1% | 1_201del |
| 8 | human | 126526 | C19orf47 | chromosome 19 open reading ... | XM_005258520.2 | 83.8% | 83.8% | 1_201del;549_550insGCA |
| 9 | human | 126526 | C19orf47 | chromosome 19 open reading ... | XM_017026292.2 | 83.1% | 80.9% | (many diffs) |
| 10 | human | 126526 | C19orf47 | chromosome 19 open reading ... | XM_017026293.2 | 82.8% | 80.7% | (many diffs) |
| 11 | human | 126526 | C19orf47 | chromosome 19 open reading ... | XM_024451364.1 | 81% | 80.2% | (many diffs) |
| 12 | human | 126526 | C19orf47 | chromosome 19 open reading ... | XM_017026295.1 | 79.1% | 79.1% | 0_1ins222 |
| 13 | human | 126526 | C19orf47 | chromosome 19 open reading ... | XM_011526460.2 | 73.9% | 73.2% | (many diffs) |
| 14 | human | 126526 | C19orf47 | chromosome 19 open reading ... | NR_046202.2 | 29% | 1_250del;1316_3664del | |
| 15 | human | 126526 | C19orf47 | chromosome 19 open reading ... | NR_156465.2 | 29% | 1_257del;1323_3671del | |
| 16 | mouse | 66367 | 2310022A10Rik | RIKEN cDNA 2310022A10 gene | NM_175107.5 | 74.8% | 76.8% | (many diffs) |
| 17 | mouse | 66367 | 2310022A10Rik | RIKEN cDNA 2310022A10 gene | XM_017312231.2 | 40.6% | 30.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1131
- ORF length:
- 1065
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT TGTGGATAAT AGGATTCAGA AGAGCATGCT GCTGGATCTC AATAAGGAGA 121 TAATGAATGA GCTGGGCGTG ACCGTGGTGG GTGACATCAT CGCCATTCTC AAGCATGCCA 181 AAGTGGTGCA CCGTCAGGAC ATGTGCAAAG CTGCCACTGA GTCAGTACCC TGCAGCCCTA 241 GCCCCCTTGC AGGCGAAATT CGCCGTGGCA CCAGTGCTGC CTCCCGAATG ATCACCAACA 301 GCCTGAACCA TGACTCTCCA CCCAGCACAC CCCCCAGGCG CCCGGACACC AGCACCTCCA 361 AGATCTCGGT CACTGTGTCC AACAAGATGG CAGCAAAGAG TGCCAAGGCC ACTGCAGCCC 421 TGGCCCGCCG GGAGGAGGAG AGCCTGGCTG TTCCTGCCAA GCGGCGCCGG GTCACTGCTG 481 AGATGGAGGG GAAGTACGTC ATCAACATGC CCAAAGGCAC CACACCCCGC ACCCGCAAGA 541 TCCTGGAGCA GCAGCAGGCT GCAAAAGGTC TCCATAGGAC GTCTGTGTTT GACCGCCTCG 601 GCGCCGAGAC CAAGGCAGAC ACCACGACAG GGAGTAAACC CACAGGAGTC TTCAGCCGCC 661 TGGGGGCCAC CCCAGAAACG GACGAGGATC TGGCTTGGGA CAGCGACAAT GACAGCAGCA 721 GCTCTGTCTT GCAGTATGCC GGGGTCCTGA AGAAGCTAGG ACGGGGCCCA GCCAAGGCCA 781 GTCCCCAGCC AGCACTGACT GTCAAAGCCA AGGCCACAAG CTCAGCGACA ACGGCTGCTG 841 CCCCGACACT GCGGCGCCTG GCGCTTTCCT CACGGTCTGG GCTTGAGAGG AAGCCGGAGT 901 CCTTGTCTAA AGTCAGCATC ATCAAGAGAC TGGGCGCAGC TGCCCTTGTG CCCGAGGCCC 961 AGGACAGCCA GGTCACCAGC ACCAAGAGTA AGTCCTCAGC CGAGGTCAAG GTCACCATTA 1021 AGAGGACTCT GGTGGGGCCC CGGGGGAGCA GCTCCAGCGA GGGCCTTGGT GCCCAGATGG 1081 ACCACGCGGG CACTGTGAGC GTGTTCAAAA GACTGGGCCG CAGGACCTTC TACCCAACTT 1141 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac