Construct: ORF ccsbBroadEn_04860
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008761.1_s300c1, BRDN0000398068
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C2orf76 (130355)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 130355 | C2orf76 | chromosome 2 open reading f... | NM_001017927.3 | 100% | 100% | |
| 2 | human | 130355 | C2orf76 | chromosome 2 open reading f... | NM_001322329.1 | 100% | 100% | |
| 3 | human | 130355 | C2orf76 | chromosome 2 open reading f... | NM_001322330.1 | 100% | 100% | |
| 4 | human | 130355 | C2orf76 | chromosome 2 open reading f... | NM_001322331.2 | 100% | 100% | |
| 5 | human | 130355 | C2orf76 | chromosome 2 open reading f... | NM_001322332.1 | 86.5% | 86.5% | 132_133ins51 |
| 6 | human | 130355 | C2orf76 | chromosome 2 open reading f... | XM_017003354.2 | 79.2% | 79.2% | 304_402del |
| 7 | human | 130355 | C2orf76 | chromosome 2 open reading f... | XR_001738623.2 | 48.4% | (many diffs) | |
| 8 | mouse | 73103 | 3110009E18Rik | RIKEN cDNA 3110009E18 gene | NM_028439.2 | 86.2% | 83.3% | (many diffs) |
| 9 | mouse | 73103 | 3110009E18Rik | RIKEN cDNA 3110009E18 gene | XM_017312452.1 | 82.3% | 79.5% | (many diffs) |
| 10 | mouse | 73103 | 3110009E18Rik | RIKEN cDNA 3110009E18 gene | NM_001172074.1 | 58.7% | 48.2% | (many diffs) |
| 11 | mouse | 73103 | 3110009E18Rik | RIKEN cDNA 3110009E18 gene | XM_017312453.1 | 56.4% | 46.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 447
- ORF length:
- 378
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCTCCTGGA GAAGTGACCA TCACAGTTCG CCTCATCCGT TCCTTTGAAC 121 ATCGCAATTT CAAACCTGTA GTGTATCACG GAGTGAATTT GGACCAAACT GTAAAGGAAT 181 TTATCGTATT TCTAAAGCAA GATATCCCTT TAAGGACCAA CCTGCCACCA CCATTCAGAA 241 ATTATAAATA TGATGCACTA AAGATTATTC ATCAAGCACA TAAATCAAAG ACAAATGAAC 301 TTGTGTTGAG TTTGGAAGAT GACGAAAGAC TCCTGCTGAA AGAAGACAGC ACTCTGAAAG 361 CAGCTGGAAT CGCCAGTGAA ACTGAAATTG CATTCTTCTG TGAAGAAGAT TATAAGAACT 421 ACAAAGCTAA TCCCATTTCA TCCTGGTTGC CAACTTTCTT GTACAAAGTt ggcattataa 481 gaaagcattg cttatcaatt tgttgcaacg aac