Construct: ORF ccsbBroadEn_04983

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008262.1_s300c1, BRDN0000455541
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CMTM4 (146223)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 146223 CMTM4 CKLF like MARVEL transmembr... NM_181521.3 100% 100%
2 human 146223 CMTM4 CKLF like MARVEL transmembr... XM_017022954.1 93.9% 94.1% 624_663delinsG
3 human 146223 CMTM4 CKLF like MARVEL transmembr... NM_178818.3 88.7% 88.8% 624_702delinsG
4 human 146223 CMTM4 CKLF like MARVEL transmembr... XM_011522882.1 86% 86% 98_99ins87
5 human 146223 CMTM4 CKLF like MARVEL transmembr... XR_933210.2 62.4% 1_86del;710_998delinsG
6 human 146223 CMTM4 CKLF like MARVEL transmembr... XR_933209.2 62.2% 1_86del;710_1001delinsG
7 mouse 97487 Cmtm4 CKLF-like MARVEL transmembr... NM_153582.5 92.3% 95.6% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
693
ORF length:
624
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCGGAGCGGC GAGGAGCTGG ACGGCTTCGA GGGCGAGGCC TCGAGCACCT
121CCATGATCTC GGGCGCCAGC AGCCCGTACC AGCCCACCAC CGAGCCGGTG AGCCAGCGCC
181GCGGGCTGGC CGGCCTGCGC TGCGACCCCG ACTACCTGCG CGGCGCGCTC GGCCGCCTCA
241AGGTCGCCCA AGTGATCTTG GCCCTGATTG CATTCATCTG CATAGAGACC ATCATGGCAT
301GCTCCCCGTG TGAAGGCCTC TACTTTTTTG AGTTTGTGAG CTGCAGTGCG TTTGTGGTGA
361CTGGCGTCTT GCTGATTATG TTCAGTCTCA ACCTGCACAT GAGGATCCCC CAGATCAACT
421GGAATCTGAC AGATTTGGTC AACACTGGAC TCAGCGCTTT CCTTTTCTTT ATTGCTTCAA
481TCGTACTGGC TGCTTTAAAC CATAGAGCCG GAGCAGAAAT TGCTGCCGTG ATATTTGGCT
541TCTTGGCGAC TGCGGCATAT GCAGTGAACA CATTCCTGGC AGTGCAGAAA TGGAGAGTCA
601GCGTCCGCCA GCAGAGCACC AATGACTACA TCCGAGCCCG CACGGAGTCC AGGGATGTGG
661ACAGTCGCCC TGAGATCCAG CGCCTGGACA CGTTGCCAAC TTTCTTGTAC AAAGTTGGca
721ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)