Transcript: Human XM_017022954.1

PREDICTED: Homo sapiens CKLF like MARVEL transmembrane domain containing 4 (CMTM4), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CMTM4 (146223)
Length:
1372
CDS:
87..752

Additional Resources:

NCBI RefSeq record:
XM_017022954.1
NBCI Gene record:
CMTM4 (146223)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017022954.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000122860 GCAGAAATTGCTGCCGTGATA pLKO.1 531 CDS 100% 4.950 6.930 N CMTM4 n/a
2 TRCN0000343192 GCAGAAATTGCTGCCGTGATA pLKO_005 531 CDS 100% 4.950 6.930 N CMTM4 n/a
3 TRCN0000144416 CAACTGGAATCTGACAGATTT pLKO.1 434 CDS 100% 13.200 9.240 N CMTM4 n/a
4 TRCN0000142470 GACTGGCGTCTTGCTGATTAT pLKO.1 377 CDS 100% 13.200 9.240 N CMTM4 n/a
5 TRCN0000141910 GCAGAGCACCAATGACTACAT pLKO.1 629 CDS 100% 4.950 3.465 N CMTM4 n/a
6 TRCN0000343194 GCAGAGCACCAATGACTACAT pLKO_005 629 CDS 100% 4.950 3.465 N CMTM4 n/a
7 TRCN0000121627 GCTGATTATGTTCAGTCTCAA pLKO.1 389 CDS 100% 4.950 3.465 N CMTM4 n/a
8 TRCN0000343191 GCTGATTATGTTCAGTCTCAA pLKO_005 389 CDS 100% 4.950 3.465 N CMTM4 n/a
9 TRCN0000144872 GAATCTGACAGATTTGGTCAA pLKO.1 440 CDS 100% 4.050 2.835 N CMTM4 n/a
10 TRCN0000143921 CCTGATTGCATTCATCTGCAT pLKO.1 281 CDS 100% 2.640 1.848 N CMTM4 n/a
11 TRCN0000142717 CGGCATATGCAGTGAACACAT pLKO.1 571 CDS 100% 0.000 0.000 N CMTM4 n/a
12 TRCN0000343193 CGGCATATGCAGTGAACACAT pLKO_005 571 CDS 100% 0.000 0.000 N CMTM4 n/a
13 TRCN0000126361 CCCAGATCAACTGGAATCTAA pLKO.1 427 CDS 100% 5.625 3.938 N Cmtm4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017022954.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04983 pDONR223 100% 93.9% 94.1% None 624_663delinsG n/a
2 ccsbBroad304_04983 pLX_304 0% 93.9% 94.1% V5 624_663delinsG n/a
3 TRCN0000477858 GTCCAGCACCTCTTCTTATCTTAT pLX_317 71.8% 93.9% 94.1% V5 624_663delinsG n/a
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