Construct: ORF ccsbBroadEn_05004
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002077.1_s300c1, BRDN0000456726
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF420 (147923)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 147923 | ZNF420 | zinc finger protein 420 | NM_144689.5 | 100% | 100% | |
| 2 | human | 147923 | ZNF420 | zinc finger protein 420 | XM_011526503.2 | 100% | 100% | |
| 3 | human | 147923 | ZNF420 | zinc finger protein 420 | XM_011526504.2 | 100% | 100% | |
| 4 | human | 147923 | ZNF420 | zinc finger protein 420 | NM_001329515.2 | 94.2% | 90.3% | (many diffs) |
| 5 | human | 147923 | ZNF420 | zinc finger protein 420 | NM_001329516.2 | 93.6% | 92.8% | (many diffs) |
| 6 | human | 147923 | ZNF420 | zinc finger protein 420 | XM_006723038.3 | 93.6% | 92.8% | (many diffs) |
| 7 | human | 147923 | ZNF420 | zinc finger protein 420 | NM_001329517.1 | 89.6% | 89.6% | 0_1ins213 |
| 8 | human | 147923 | ZNF420 | zinc finger protein 420 | NM_001329518.1 | 89.6% | 89.6% | 0_1ins213 |
| 9 | human | 147923 | ZNF420 | zinc finger protein 420 | NM_001329519.1 | 89.6% | 89.6% | 0_1ins213 |
| 10 | human | 147923 | ZNF420 | zinc finger protein 420 | NM_001329520.1 | 89.6% | 89.6% | 0_1ins213 |
| 11 | human | 147923 | ZNF420 | zinc finger protein 420 | XM_011526507.3 | 89.6% | 89.6% | 0_1ins213 |
| 12 | human | 147923 | ZNF420 | zinc finger protein 420 | XM_011526508.2 | 89.6% | 89.6% | 0_1ins213 |
| 13 | human | 147923 | ZNF420 | zinc finger protein 420 | XM_011526510.2 | 89.6% | 89.6% | 0_1ins213 |
| 14 | human | 147923 | ZNF420 | zinc finger protein 420 | XM_017026338.1 | 89.6% | 89.6% | 0_1ins213 |
| 15 | human | 147923 | ZNF420 | zinc finger protein 420 | NM_001329521.2 | 83.3% | 82.5% | (many diffs) |
| 16 | human | 147923 | ZNF420 | zinc finger protein 420 | XM_024451382.1 | 83.3% | 82.5% | (many diffs) |
| 17 | human | 147923 | ZNF420 | zinc finger protein 420 | NM_001329522.2 | 74.6% | 69.2% | (many diffs) |
| 18 | human | 147923 | ZNF420 | zinc finger protein 420 | XM_011526511.2 | 69.5% | 68.4% | (many diffs) |
| 19 | human | 147923 | ZNF420 | zinc finger protein 420 | NM_001329524.2 | 59.2% | 58.1% | (many diffs) |
| 20 | mouse | 233058 | Zfp420 | zinc finger protein 420 | NM_172740.2 | 71.5% | 76.3% | (many diffs) |
| 21 | mouse | 233058 | Zfp420 | zinc finger protein 420 | XM_006539873.3 | 71.5% | 76.3% | (many diffs) |
| 22 | mouse | 233058 | Zfp420 | zinc finger protein 420 | XM_011250536.2 | 71.5% | 76.3% | (many diffs) |
| 23 | mouse | 233058 | Zfp420 | zinc finger protein 420 | XM_011250537.2 | 71.5% | 76.3% | (many diffs) |
| 24 | mouse | 233058 | Zfp420 | zinc finger protein 420 | XM_011250538.1 | 71.5% | 76.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2130
- ORF length:
- 2064
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TCGGAAATTA GTGATGTTCA GGGATGTTGC CATTGACTTC TCTCAGGAAG 121 AGTGGGAATG CCTGGACTCT GCTCAGAGAG ATTTGTATAG AGATGTGATG TTGGAGAACT 181 ATAGCAACTT GGTATCACTA GACTTGCCTT CAAGGTGTGC AAGTAAGGAC TTATCTCCAG 241 AAAAGAACAC TTATGAAACA GAATTATCCC AATGGGAAAT GAGTGACAGA CTTGAAAACT 301 GTGATCTTGA AGAGTCCAAT TCCAGGGATT ATTTGGAAGC CAAAGGCAAG ATGGAGAAGC 361 AACAAGAAAA TCAGAAGGAA TATTTCAGGC AAGGGATGAT CATATATGAC AAAATGTCCA 421 TTTTCAACCA GCATACTTAC TTATCTCAAC ATTCAAGATG TCATTCTACT GAGAAACCCT 481 ATAAATGTAA GGAATGTGGG AAAGCCTTCA GACGAGCCTC ACACCTAACA CAACATCAAA 541 GTATTCATAC TGGTGAAAAA CCCTATGAAT GTAAGCAATG CGGGAAGGCC TTTAGTCGTG 601 ATTCACAACT CAGTCTTCAT CAGAGACTTC ATACTGGTGA GAAACCCTAT GCATGTAAGG 661 AATGTGGGAA GGCCTTTACT CAAAGCTCAC AACTTATTTT ACATCATAGA ATTCATACTG 721 GTGAAAAACC ATATAAATGT GAAGAATGTG GGAAAGCCTT TATTCGTAGC TCACAACTTA 781 CCCGACATCA AAAAGTTCAT ACTGGTGAGA AACCTTATGA ATGTAAAGAA TGTGGGAAGG 841 CCTTTACTCA GAATTCACAA CTTACACTAC ACCAGAGACT TCATACTGGT GAAAAGCTCT 901 ATGAATGTAA AGAATGTAGG AAGGTCTTTA CTCAGCTCTC ACAACTTATT CTGCATAAGA 961 GAATTCATAC CGGTGAGAAA CCCTATGAAT GTAAGGAATG TGGAAAAGCT TTTATTTGTG 1021 GCTCACAGCT TTCTCAACAT CAGAAAATTC ATAATGGGGA AAAACCATAT GAATGTAAGG 1081 AATGTGGAAG GGCCTTTATT CGGGGCTCAC TACTGATGCA ACATCAGAGG ATTCATACTG 1141 GTGAAAAACC CTATAAATGT GAAGAATGTG GGAAGGCCTT TATCCGTGGC TCACAACTTA 1201 CTCAACACCA GAGAATTCAC ACCAATGAAA AGCCCTATGA ATGTAAGGAA TGTGGAAAGA 1261 TGTTTAGTCA TGGCTCACAA CTTACTCAAC ATCAGAGAAT ACACACTGGT GAGAAACCCT 1321 ATCAATGTAA GGAATGTGGA AAAGCGTTTA ATCGTGGCTC ACTCCTTACA CGACACCAGA 1381 GGATTCATAC TGGTGAGAAA CCCTATGAAT GTAAAGAATG TGGAAAAACC TTTAGTCGTG 1441 GCTCAGAACT TACTCAACAT GAGCGAATTC ACACAGGTGA GAAACCCTAT GAATGTAAGG 1501 AATGTGGGAA ATCTTTTATT CGTGGTTCCC AGCTTACTCA ACATCAGAGA ATCCATACTG 1561 GTGAGAAACC TTATGAATGT AAAGAATGTA GAATGGCCTT TACTCAGAGT TCACATCTTT 1621 CCCAACATCA AAGACTTCAC ACTGGTGAGA AACCCTATGT GTGTAATGAA TGTGGAAAGG 1681 CCTTTGCGCG TGGCTTACTA CTTATACAAC ATCAGAGAAT TCATACTGGT GAGAAACCAT 1741 ATCAATGTAA GGAATGTGGG AAAGCCTTTA TTCGTGGTTC ACAGTTGACT CAACATCAGC 1801 GAATTCACAC TGGAGAAAAA CCCTATGAAT GCAAGGAGTG TGGCAAGGCC TTTAGTCATG 1861 GCTCTCAGCT TACTCTACAT CAGAGAATCC ATACTGGTGA GAAGCCCTAT GAATGCAGAG 1921 AATGTAGAAA GGCCTTTACT CAGAGTTCAC ATCTTTCTCG GCATCAGAGA ATTCATACTG 1981 GTGAGAAACC ATATCAATGT AAGGAATGTG GGAAGGCCTT TACTCGTGGT TCACAGCTAA 2041 CTCAACATCA GAGAATTCAT ATCAGTGAGA AATCTTTTGA ATATAAGGAA TGTGGGATTG 2101 ACTTTAGTCA TGGCTCACAA GTTTACATGT GCCCAACTTT CTTGTACAAA GTTGGcatta 2161 taagaaagca ttgcttatca atttgttgca acgaac