Construct: ORF ccsbBroadEn_05006

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013170.1_s300c1, BRDN0000398255
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF583 (147949)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 147949 ZNF583 zinc finger protein 583 NM_001159860.1 100% 100%
2 human 147949 ZNF583 zinc finger protein 583 NM_001159861.2 100% 100%
3 human 147949 ZNF583 zinc finger protein 583 NM_152478.3 100% 100%
4 human 147949 ZNF583 zinc finger protein 583 XM_011526517.2 100% 100%
5 human 147949 ZNF583 zinc finger protein 583 XM_017026350.1 100% 100%
6 human 147949 ZNF583 zinc finger protein 583 XM_024451383.1 100% 100%
7 human 147949 ZNF583 zinc finger protein 583 XM_017026346.2 99.8% 99.8% 136_138delGCA
8 human 147949 ZNF583 zinc finger protein 583 XM_017026347.2 99.8% 99.8% 136_138delGCA
9 human 147949 ZNF583 zinc finger protein 583 XM_017026348.1 99.8% 99.8% 136_138delGCA
10 human 147949 ZNF583 zinc finger protein 583 XM_017026349.1 99.8% 99.8% 136_138delGCA
11 human 147949 ZNF583 zinc finger protein 583 XM_005258558.1 99.7% 99.6% 4_5insC;7_10delTTTC
12 human 147949 ZNF583 zinc finger protein 583 XM_017026351.2 90.7% 87% (many diffs)
13 human 147949 ZNF583 zinc finger protein 583 XM_017026352.2 90.7% 87% (many diffs)
14 human 147949 ZNF583 zinc finger protein 583 XM_017026353.1 90.7% 87% (many diffs)
15 mouse 213011 Zfp583 zinc finger protein 583 NM_001033249.3 85.1% 82.6% (many diffs)
16 mouse 213011 Zfp583 zinc finger protein 583 XM_011250475.2 85.1% 82.6% (many diffs)
17 mouse 213011 Zfp583 zinc finger protein 583 XM_011250473.2 85% 82.4% (many diffs)
18 mouse 213011 Zfp583 zinc finger protein 583 XM_011250474.2 85% 82.4% (many diffs)
19 mouse 213011 Zfp583 zinc finger protein 583 XM_011250471.2 80.2% 77.7% (many diffs)
20 mouse 213011 Zfp583 zinc finger protein 583 XM_011250472.2 80.2% 77.7% (many diffs)
21 mouse 213011 Zfp583 zinc finger protein 583 XM_011250468.2 80% 77.5% (many diffs)
22 mouse 213011 Zfp583 zinc finger protein 583 XM_011250469.2 80% 77.5% (many diffs)
23 mouse 213011 Zfp583 zinc finger protein 583 XM_011250470.2 80% 77.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1776
ORF length:
1707
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTCCAAGGAT TTGGTGACAT TTGGGGATGT GGCTGTAAAT TTCTCTCAAG
121AGGAATGGGA ATGGCTGAAC CCTGCTCAGA GGAATTTGTA CAGGAAAGTG ATGTTGGAGA
181ACTACAGGAG CTTGGTATCA TTGGGAGTTT CTGTTTCTAA GCCAGATGTG ATCTCATTAT
241TGGAGCAAGG AAAAGAGCCC TGGATGGTGA AGAAGGAGGG AACAAGAGGC CCATGCCCTG
301ATTGGGAGTA TGTATTTAAA AACAGTGAAT TTTCATCAAA GCAAGAGACA TATGAAGAAT
361CATCCAAAGT TGTGACAGTG GGAGCAAGAC ATCTTAGTTA TAGCCTTGAC TATCCCAGTT
421TGAGAGAAGA CTGTCAAAGT GAGGACTGGT ATAAGAACCA GCTGGGAAGT CAAGAGGTAC
481ATCTTAGTCA ATTAATCATC ACTCATAAAG AAATCCTTCC AGAAGTTCAA AATAAAGAAT
541ATAACAAATC TTGGCAAACA TTCCACCAGG ATACAATCTT TGATATACAA CAGAGTTTTC
601CCACCAAAGA AAAAGCACAT AAGCATGAAC CACAAAAGAA AAGTTACCGA AAAAAATCTG
661TTGAAATGAA ACATAGGAAA GTCTATGTAG AAAAGAAACT TTTGAAATGT AATGATTGTG
721AGAAAGTCTT CAACCAGAGC TCATCCCTTA CTCTTCATCA GAGAATTCAT ACTGGAGAGA
781AACCCTATGC ATGTGTTGAA TGTGGGAAAA CGTTCAGCCA GAGTGCAAAC TTGGCGCAAC
841ATAAGAGAAT ACATACTGGA GAGAAACCCT ATGAATGTAA AGAATGTAGG AAAGCCTTCA
901GCCAGAATGC ACACCTGGCC CAACATCAGA GAGTTCATAC TGGAGAGAAA CCTTATCAGT
961GTAAAGAATG TAAAAAAGCC TTCAGCCAGA TTGCACACCT GACTCAGCAT CAGAGAGTTC
1021ATACTGGAGA GAGACCTTTC GAATGTATTG AATGTGGAAA GGCCTTTAGT AATGGTTCAT
1081TTCTTGCTCA GCATCAGAGA ATTCATACAG GAGAGAAACC TTATGTGTGT AATGTGTGTG
1141GGAAAGCCTT TAGCCATCGT GGATACCTAA TTGTACATCA GAGAATTCAT ACTGGAGAGA
1201GACCCTACGA ATGTAAGGAA TGTAGGAAAG CCTTCAGCCA GTATGCACAC CTTGCTCAAC
1261ATCAGAGAGT TCATACTGGA GAAAAACCTT ATGAATGTAA AGTATGTAGG AAAGCCTTCA
1321GCCAAATTGC ATACCTTGAT CAACATCAGA GGGTTCATAC TGGAGAGAAA CCCTATGAAT
1381GTATTGAATG TGGGAAGGCC TTTAGCAATA GTTCATCACT TGCACAACAT CAGAGAAGTC
1441ATACTGGAGA AAAACCCTAT ATGTGTAAGG AATGTAGGAA AACATTTAGC CAGAATGCAG
1501GCCTTGCTCA ACATCAGAGA ATTCATACTG GAGAGAAACC TTATGAATGT AATGTTTGTG
1561GGAAAGCATT TAGCTATAGT GGATCTCTTA CTCTACATCA GAGAATTCAT ACTGGAGAAA
1621GACCCTATGA ATGTAAAGAT TGCAGGAAAT CTTTCAGGCA GCGTGCACAT CTTGCTCATC
1681ATGAGAGAAT TCATACTATG GAGTCATTCT TGACTCTTTC CTCTCCCTCA CCCTCCACAT
1741CAAATCAGTT GCCAAGACCT GTAGGTTTCA TCTCCTTGCC AACTTTCTTG TACAAAGTtg
1801gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)